Configuration

EternaFold

EternaFold as evaluated in the cited study. version 1.3.1, default parameters

Sources

Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 8 EternaFold, column 2: bpRNA-TS0 INF

4 evaluations · 16 results

Overview

Key specifications have not been extracted for this record. See the linked evaluation and sources for the reported setup.

limited source coverage · Automated source review, 2026-09-17. All specifications and missing details

Evaluations and results

4 evaluations · 16 results. Different protocols are not a single leaderboard.

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Tested model or methodProtocolDatasetEvaluation setupMetricEvidence origin

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Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: EternaFold	Protocol: bpRNA-TS0 (RNA secondary structure) Dataset: bpRNA-TS0	0.539 F1 unitless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source EternaFold: bpRNA-TS0 Sequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 8 EternaFold, column 3: bpRNA-TS0 F1
Configuration: EternaFold	Protocol: Rfam12.3–14.10 (RNA secondary structure) Dataset: Rfam12.3–14.10	0.672 INF unitless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source EternaFold: Rfam12.3–14.10 Family-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 2 (Tab2), row 8 EternaFold, column 2: Rfam12.3–14.10 INF
Configuration: EternaFold	Protocol: bpRNA-TS0 (RNA secondary structure) Dataset: bpRNA-TS0	0.663 Recall unitless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source EternaFold: bpRNA-TS0 Sequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 8 EternaFold, column 5: bpRNA-TS0 Recall
Configuration: EternaFold	Protocol: Rfam12.3–14.10 (RNA secondary structure) Dataset: Rfam12.3–14.10	0.664 F1 unitless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source EternaFold: Rfam12.3–14.10 Family-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 2 (Tab2), row 8 EternaFold, column 3: Rfam12.3–14.10 F1
Configuration: EternaFold	Protocol: PDB (RNA secondary structure) Dataset: PDB RNA set	0.76 INF unitless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source EternaFold: PDB Family-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 2 (Tab2), row 8 EternaFold, column 6: PDB INF
Configuration: EternaFold	Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII	0.599 F1 unitless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source EternaFold: ArchiveII Sequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 8 EternaFold, column 7: ArchiveII F1
Configuration: EternaFold	Protocol: PDB (RNA secondary structure) Dataset: PDB RNA set	0.785 Precision unitless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source EternaFold: PDB Family-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 2 (Tab2), row 8 EternaFold, column 8: PDB Precision
Configuration: EternaFold	Protocol: bpRNA-TS0 (RNA secondary structure) Dataset: bpRNA-TS0	0.553 INF unitless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source EternaFold: bpRNA-TS0 Sequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 8 EternaFold, column 2: bpRNA-TS0 INF
Configuration: EternaFold	Protocol: bpRNA-TS0 (RNA secondary structure) Dataset: bpRNA-TS0	0.475 Precision unitless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source EternaFold: bpRNA-TS0 Sequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 8 EternaFold, column 4: bpRNA-TS0 Precision
Configuration: EternaFold	Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII	0.573 Precision unitless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source EternaFold: ArchiveII Sequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 8 EternaFold, column 8: ArchiveII Precision
Configuration: EternaFold	Protocol: PDB (RNA secondary structure) Dataset: PDB RNA set	0.758 F1 unitless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source EternaFold: PDB Family-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 2 (Tab2), row 8 EternaFold, column 7: PDB F1
Configuration: EternaFold	Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII	0.601 INF unitless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source EternaFold: ArchiveII Sequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 8 EternaFold, column 6: ArchiveII INF
Configuration: EternaFold	Protocol: PDB (RNA secondary structure) Dataset: PDB RNA set	0.741 Recall unitless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source EternaFold: PDB Family-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 2 (Tab2), row 8 EternaFold, column 9: PDB Recall
Configuration: EternaFold	Protocol: ArchiveII (RNA secondary structure) Dataset: ArchiveII	0.636 Recall unitless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source EternaFold: ArchiveII Sequence-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 8 EternaFold, column 9: ArchiveII Recall
Configuration: EternaFold	Protocol: Rfam12.3–14.10 (RNA secondary structure) Dataset: Rfam12.3–14.10	0.746 Recall unitless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source EternaFold: Rfam12.3–14.10 Family-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 2 (Tab2), row 8 EternaFold, column 5: Rfam12.3–14.10 Recall
Configuration: EternaFold	Protocol: Rfam12.3–14.10 (RNA secondary structure) Dataset: Rfam12.3–14.10	0.613 Precision unitless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source EternaFold: Rfam12.3–14.10 Family-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics. Aggregation: Not reported Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 2 (Tab2), row 8 EternaFold, column 4: Rfam12.3–14.10 Precision

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Evaluation in this paper

version 1.3.1, default parameters

Sources

Deep generalizable prediction of RNA secondary structure via base pair motif energy · Table 1 (Tab1), row 8 EternaFold, column 2: bpRNA-TS0 INF

Strengths, limitations and unresolved questions

Strengths and limitations

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Stable record: paper-model-2b2f4c2d8f2f29e540

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Inputs, training, access and other details

Explanatory profile: limited source coverage · Automated source review, 2026-09-17. Review applies to the cited claims; unresolved fields are listed below. Numerical results retain their own review status.

Inputs, outputs and configuration
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Evidence

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Evidence table

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2 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statement	Original source and location	Review and provenance
Evaluation in this paper version 1.3.1, default parameters Individual claims	Deep generalizable prediction of RNA secondary structure via base pair motif energy Original source ↗ Table 1 (Tab1), row 8 EternaFold, column 2: bpRNA-TS0 INF Version: version of record Retrieved: 2026-09-16T10:41:16.502000+00:00	source checked automated source review · 2026-09-17 Audit details Primary-source transcription and separate automated review. No human sign-off or experimental reproduction. Field: `attributes.profile.sections.0.body` Source artifact SHA-256: `976218bd172998a1a6e7ed1609ecb8cb2ee380fb48a8dc7b25bc05ea8b0a49af` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Introduction EternaFold as evaluated in the cited study. version 1.3.1, default parameters Individual claims	Deep generalizable prediction of RNA secondary structure via base pair motif energy Original source ↗ Table 1 (Tab1), row 8 EternaFold, column 2: bpRNA-TS0 INF Version: version of record Retrieved: 2026-09-16T10:41:16.502000+00:00	source checked automated source review · 2026-09-17 Audit details Primary-source transcription and separate automated review. No human sign-off or experimental reproduction. Field: `attributes.profile.summary` Source artifact SHA-256: `976218bd172998a1a6e7ed1609ecb8cb2ee380fb48a8dc7b25bc05ea8b0a49af` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Technical metadata and extraction receipts

Stable ID: paper-model-2b2f4c2d8f2f29e540

areas: rna-transcriptomes
tasks: RNA secondary structure
entity level: method
configuration type: reported_configuration
version: version 1.3.1, default parameters
legacy kinds: model
entity classification: review date: 2026-09-17; rationale: This source-scoped entry preserves the method/configuration actually named in an evaluation. It is neither a global family identity nor proof of an immutable checkpoint; the linked evaluation retains adaptation, fitting and scoring details.; source ids: bpfold-2025; source locator: Table 1 (Tab1), row 8 EternaFold, column 2: bpRNA-TS0 INF; ambiguities: Configuration means the source-labelled evaluated identity. It does not establish missing checkpoint hashes, default settings or equivalence to same-named records in other papers.

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