Held-out test data for the DNALONGBENCH Regulatory sequence activity prediction task.
5 evaluations · 15 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Caduceus-Ph (DNALONGBENCH) | Protocol: DNALONGBENCH Regulatory sequence activity prediction (Table 5) Dataset: DNALONGBENCH Regulatory sequence activity prediction test set | 0.349 Pearson (average over RSAP conditions as printed) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-Ph on DNALONGBENCH RSAP lit-genomics-20261011-dnalongbench-protocol-rsap Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 5, row 'Caduceus-Ph', column 'Avg' |
| Configuration: Caduceus-Ph (DNALONGBENCH) | Protocol: DNALONGBENCH Regulatory sequence activity prediction (Table 5) Dataset: DNALONGBENCH Regulatory sequence activity prediction test set | 0.301 Pearson (Human) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-Ph on DNALONGBENCH RSAP lit-genomics-20261011-dnalongbench-protocol-rsap Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 5, row 'Caduceus-Ph', column 'Human' |
| Configuration: Caduceus-Ph (DNALONGBENCH) | Protocol: DNALONGBENCH Regulatory sequence activity prediction (Table 5) Dataset: DNALONGBENCH Regulatory sequence activity prediction test set | 0.4 Pearson (Mouse) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-Ph on DNALONGBENCH RSAP lit-genomics-20261011-dnalongbench-protocol-rsap Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 5, row 'Caduceus-Ph', column 'Mouse' |
| Configuration: Caduceus-PS (DNALONGBENCH) | Protocol: DNALONGBENCH Regulatory sequence activity prediction (Table 5) Dataset: DNALONGBENCH Regulatory sequence activity prediction test set | 0.344 Pearson (average over RSAP conditions as printed) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-PS on DNALONGBENCH RSAP lit-genomics-20261011-dnalongbench-protocol-rsap Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 5, row 'Caduceus-PS', column 'Avg' |
| Configuration: Caduceus-PS (DNALONGBENCH) | Protocol: DNALONGBENCH Regulatory sequence activity prediction (Table 5) Dataset: DNALONGBENCH Regulatory sequence activity prediction test set | 0.301 Pearson (Human) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-PS on DNALONGBENCH RSAP lit-genomics-20261011-dnalongbench-protocol-rsap Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 5, row 'Caduceus-PS', column 'Human' |
| Configuration: Caduceus-PS (DNALONGBENCH) | Protocol: DNALONGBENCH Regulatory sequence activity prediction (Table 5) Dataset: DNALONGBENCH Regulatory sequence activity prediction test set | 0.387 Pearson (Mouse) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-PS on DNALONGBENCH RSAP lit-genomics-20261011-dnalongbench-protocol-rsap Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 5, row 'Caduceus-PS', column 'Mouse' |
| Configuration: CNN (DNALONGBENCH, RSAP) | Protocol: DNALONGBENCH Regulatory sequence activity prediction (Table 5) Dataset: DNALONGBENCH Regulatory sequence activity prediction test set | 0.431 Pearson (average over RSAP conditions as printed) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcelit-genomics-20261011-dnalongbench-protocol-rsap Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 5, row 'CNN', column 'Avg' |
| Configuration: CNN (DNALONGBENCH, RSAP) | Protocol: DNALONGBENCH Regulatory sequence activity prediction (Table 5) Dataset: DNALONGBENCH Regulatory sequence activity prediction test set | 0.538 Pearson (Human) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcelit-genomics-20261011-dnalongbench-protocol-rsap Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 5, row 'CNN', column 'Human' |
| Configuration: CNN (DNALONGBENCH, RSAP) | Protocol: DNALONGBENCH Regulatory sequence activity prediction (Table 5) Dataset: DNALONGBENCH Regulatory sequence activity prediction test set | 0.323 Pearson (Mouse) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcelit-genomics-20261011-dnalongbench-protocol-rsap Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 5, row 'CNN', column 'Mouse' |
| Configuration: Enformer (DNALONGBENCH, RSAP) | Protocol: DNALONGBENCH Regulatory sequence activity prediction (Table 5) Dataset: DNALONGBENCH Regulatory sequence activity prediction test set | 0.574 Pearson (average over RSAP conditions as printed) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceExpert Model on DNALONGBENCH RSAP lit-genomics-20261011-dnalongbench-protocol-rsap Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 5, row 'Expert Model', column 'Avg' |
| Configuration: Enformer (DNALONGBENCH, RSAP) | Protocol: DNALONGBENCH Regulatory sequence activity prediction (Table 5) Dataset: DNALONGBENCH Regulatory sequence activity prediction test set | 0.669 Pearson (Human) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceExpert Model on DNALONGBENCH RSAP lit-genomics-20261011-dnalongbench-protocol-rsap Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 5, row 'Expert Model', column 'Human' |
| Configuration: Enformer (DNALONGBENCH, RSAP) | Protocol: DNALONGBENCH Regulatory sequence activity prediction (Table 5) Dataset: DNALONGBENCH Regulatory sequence activity prediction test set | 0.479 Pearson (Mouse) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceExpert Model on DNALONGBENCH RSAP lit-genomics-20261011-dnalongbench-protocol-rsap Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 5, row 'Expert Model', column 'Mouse' |
| Configuration: HyenaDNA (DNALONGBENCH) | Protocol: DNALONGBENCH Regulatory sequence activity prediction (Table 5) Dataset: DNALONGBENCH Regulatory sequence activity prediction test set | 0.347 Pearson (average over RSAP conditions as printed) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcelit-genomics-20261011-dnalongbench-protocol-rsap Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 5, row 'HyenaDNA', column 'Avg' |
| Configuration: HyenaDNA (DNALONGBENCH) | Protocol: DNALONGBENCH Regulatory sequence activity prediction (Table 5) Dataset: DNALONGBENCH Regulatory sequence activity prediction test set | 0.298 Pearson (Human) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcelit-genomics-20261011-dnalongbench-protocol-rsap Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 5, row 'HyenaDNA', column 'Human' |
| Configuration: HyenaDNA (DNALONGBENCH) | Protocol: DNALONGBENCH Regulatory sequence activity prediction (Table 5) Dataset: DNALONGBENCH Regulatory sequence activity prediction test set | 0.396 Pearson (Mouse) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcelit-genomics-20261011-dnalongbench-protocol-rsap Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 5, row 'HyenaDNA', column 'Mouse' |
Source checking is not independent reproduction. Release 2026-10-23-5347695500ed.
0 of 4 readiness checks met. These checks assess whether the evidence supports a reproducible investigation; a source-checked score alone does not meet them.
Release 2026-10-23-5347695500ed · Evidence verified: Not verified
Exact outcomes, predictions, identifiers and evaluator are connected.
Missing or unresolved evidence
Verified: Not verified
Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.
Missing or unresolved evidence
Verified: Not verified
A pinned recipe describes the inputs, environment and resource requirements.
Missing or unresolved evidence
Verified: Not verified
Separate data and exposure records support an independent test.
Missing or unresolved evidence
Verified: Not verified
Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.
No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.
A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
4 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Source location Methods 'Benchmark dataset' for Regulatory sequence activity prediction; Table 2 Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks Methods 'Benchmark dataset' for Regulatory sequence activity prediction; Table 2 Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Split Held-out test set as defined by DNALONGBENCH Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks Methods 'Benchmark dataset' for Regulatory sequence activity prediction; Table 2 Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description Held-out test data for the DNALONGBENCH Regulatory sequence activity prediction task. Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks Methods 'Benchmark dataset' for Regulatory sequence activity prediction; Table 2 Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Name DNALONGBENCH Regulatory sequence activity prediction test set Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks Methods 'Benchmark dataset' for Regulatory sequence activity prediction; Table 2 Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-23-5347695500ed · Record review: source checked
Stable ID: lit-genomics-20261011-dnalongbench-data-rsap