Configuration

Enformer (DNALONGBENCH, RSAP)

Configuration of Enformer: Expert model for RSAP: Enformer.

1 evaluation · 3 results 1 open disagreement between studies involves its model

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Evaluations and results

1 evaluation · 3 results. Different protocols are not a single leaderboard.

Protocol: DNALONGBENCH Regulatory sequence activity prediction (Table 5) · Dataset: DNALONGBENCH Regulatory sequence activity prediction test set

Sorted by Pearson (average over RSAP conditions as printed) (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.

Tested configuration	Pearson (average over RSAP conditions as printed)	Pearson (Human)	Pearson (Mouse)
Enformer (DNALONGBENCH, RSAP)Evaluation	0.574	0.669	0.479

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Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: Enformer (DNALONGBENCH, RSAP)	Protocol: DNALONGBENCH Regulatory sequence activity prediction (Table 5) Dataset: DNALONGBENCH Regulatory sequence activity prediction test set	0.574 Pearson (average over RSAP conditions as printed) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Expert Model on DNALONGBENCH RSAP lit-genomics-20261011-dnalongbench-protocol-rsap Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 5, row 'Expert Model', column 'Avg'
Configuration: Enformer (DNALONGBENCH, RSAP)	Protocol: DNALONGBENCH Regulatory sequence activity prediction (Table 5) Dataset: DNALONGBENCH Regulatory sequence activity prediction test set	0.669 Pearson (Human) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Expert Model on DNALONGBENCH RSAP lit-genomics-20261011-dnalongbench-protocol-rsap Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 5, row 'Expert Model', column 'Human'
Configuration: Enformer (DNALONGBENCH, RSAP)	Protocol: DNALONGBENCH Regulatory sequence activity prediction (Table 5) Dataset: DNALONGBENCH Regulatory sequence activity prediction test set	0.479 Pearson (Mouse) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Expert Model on DNALONGBENCH RSAP lit-genomics-20261011-dnalongbench-protocol-rsap Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 5, row 'Expert Model', column 'Mouse'

Source checking is not independent reproduction. Release 2026-10-23-5347695500ed.

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Release 2026-10-23-5347695500ed · Record review: source checked

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DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Original source · Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML

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Technical metadata and extraction receipts

Stable ID: lit-genomics-20261011-dnalongbench-config-enformer-rsap

areas: dna-genomes
contexts: research
method types: supervised_machine_learning
reported name: Expert Model (Enformer)
foundation model eligible: false
parameters: Expert model for RSAP: Enformer
access reuse: Not stated in the main text
source locator: Methods 'Expert model', 'CNN' and 'DNA Foundation Model'
missing metadata: version: reason: unreported; note: Checkpoint or release not printed beyond the model name
provenance note: Enformer as evaluated in DNALONGBENCH.

Related records

configuration of: Enformer
system: Expert Model on DNALONGBENCH RSAP

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