rewirebio.iobenchmarks
Dataset

RVDB C-RVDB v31.0 long-sequence dataset, 16 classes

Viral sequences above 50,000 bp (test sequences 84,587 to 409,110 bp) from 16 manually reviewed classes, with the split inverted to about 20% indexed and 80% queried.

Evaluation results

5 evaluations · 30 results. Different protocols are not a single leaderboard.

Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: BLAST 2.12.0 blastn, top hit (Bůžková et al. 2026)Protocol: RVDB long-sequence viral classification, 16 classes (Bůžková et al. 2026 Table 10)
Dataset: RVDB C-RVDB v31.0 long-sequence dataset, 16 classes
0.977 Accuracy (16-class long-sequence RVDB dataset)
fraction · higher

Uncertainty: 95% CI 0.950 to 0.989. Wilson binomial interval quoted in Section 3.8; method stated in Section 2.9

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

BLAST (blastn) on the RVDB long-sequence dataset, 16 classes

gfm2-20261011-buzkova2026-protocol-long

Aggregation: Not reported

Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 10, row 'BLAST (blastn)', column 'Accuracy'
Configuration: BLAST 2.12.0 blastn, top hit (Bůžková et al. 2026)Protocol: RVDB long-sequence viral classification, 16 classes (Bůžková et al. 2026 Table 10)
Dataset: RVDB C-RVDB v31.0 long-sequence dataset, 16 classes
0.977 Balanced accuracy (16-class long-sequence RVDB dataset)
fraction · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

BLAST (blastn) on the RVDB long-sequence dataset, 16 classes

gfm2-20261011-buzkova2026-protocol-long

Aggregation: Not reported

Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 10, row 'BLAST (blastn)', column 'Bal. Acc.'
Configuration: BLAST 2.12.0 blastn, top hit (Bůžková et al. 2026)Protocol: RVDB long-sequence viral classification, 16 classes (Bůžková et al. 2026 Table 10)
Dataset: RVDB C-RVDB v31.0 long-sequence dataset, 16 classes
0.977 Macro F1 (16-class long-sequence RVDB dataset)
fraction · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

BLAST (blastn) on the RVDB long-sequence dataset, 16 classes

gfm2-20261011-buzkova2026-protocol-long

Aggregation: Not reported

Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 10, row 'BLAST (blastn)', column 'F1'
Configuration: BLAST 2.12.0 blastn, top hit (Bůžková et al. 2026)Protocol: RVDB long-sequence viral classification, 16 classes (Bůžková et al. 2026 Table 10)
Dataset: RVDB C-RVDB v31.0 long-sequence dataset, 16 classes
0.975 MCC (16-class long-sequence RVDB dataset)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

BLAST (blastn) on the RVDB long-sequence dataset, 16 classes

gfm2-20261011-buzkova2026-protocol-long

Aggregation: Not reported

Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 10, row 'BLAST (blastn)', column 'MCC'
Configuration: BLAST 2.12.0 blastn, top hit (Bůžková et al. 2026)Protocol: RVDB long-sequence viral classification, 16 classes (Bůžková et al. 2026 Table 10)
Dataset: RVDB C-RVDB v31.0 long-sequence dataset, 16 classes
0.978 Precision (16-class long-sequence RVDB dataset, macro-averaged over classes)
fraction · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

BLAST (blastn) on the RVDB long-sequence dataset, 16 classes

gfm2-20261011-buzkova2026-protocol-long

Aggregation: Not reported

Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 10, row 'BLAST (blastn)', column 'Precision'
Configuration: BLAST 2.12.0 blastn, top hit (Bůžková et al. 2026)Protocol: RVDB long-sequence viral classification, 16 classes (Bůžková et al. 2026 Table 10)
Dataset: RVDB C-RVDB v31.0 long-sequence dataset, 16 classes
0.977 Recall (16-class long-sequence RVDB dataset, macro-averaged over classes)
fraction · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

BLAST (blastn) on the RVDB long-sequence dataset, 16 classes

gfm2-20261011-buzkova2026-protocol-long

Aggregation: Not reported

Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 10, row 'BLAST (blastn)', column 'Recall'
Configuration: DNABERT-2, frozen embeddings, pooling not stated, 1-NN, long-sequence run (Bůžková et al. 2026)Protocol: RVDB long-sequence viral classification, 16 classes (Bůžková et al. 2026 Table 10)
Dataset: RVDB C-RVDB v31.0 long-sequence dataset, 16 classes
0.786 Accuracy (16-class long-sequence RVDB dataset, chunk-scored)
fraction · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

DNABERT-2ᵃ on the RVDB long-sequence dataset, 16 classes

gfm2-20261011-buzkova2026-protocol-long

Aggregation: Not reported

Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 10, row 'DNABERT-2ᵃ', column 'Accuracy'
Configuration: DNABERT-2, frozen embeddings, pooling not stated, 1-NN, long-sequence run (Bůžková et al. 2026)Protocol: RVDB long-sequence viral classification, 16 classes (Bůžková et al. 2026 Table 10)
Dataset: RVDB C-RVDB v31.0 long-sequence dataset, 16 classes
0.817 Balanced accuracy (16-class long-sequence RVDB dataset, chunk-scored)
fraction · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

DNABERT-2ᵃ on the RVDB long-sequence dataset, 16 classes

gfm2-20261011-buzkova2026-protocol-long

Aggregation: Not reported

Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 10, row 'DNABERT-2ᵃ', column 'Bal. Acc.'
Configuration: DNABERT-2, frozen embeddings, pooling not stated, 1-NN, long-sequence run (Bůžková et al. 2026)Protocol: RVDB long-sequence viral classification, 16 classes (Bůžková et al. 2026 Table 10)
Dataset: RVDB C-RVDB v31.0 long-sequence dataset, 16 classes
0.813 Macro F1 (16-class long-sequence RVDB dataset, chunk-scored)
fraction · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

DNABERT-2ᵃ on the RVDB long-sequence dataset, 16 classes

gfm2-20261011-buzkova2026-protocol-long

Aggregation: Not reported

Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 10, row 'DNABERT-2ᵃ', column 'F1'
Configuration: DNABERT-2, frozen embeddings, pooling not stated, 1-NN, long-sequence run (Bůžková et al. 2026)Protocol: RVDB long-sequence viral classification, 16 classes (Bůžková et al. 2026 Table 10)
Dataset: RVDB C-RVDB v31.0 long-sequence dataset, 16 classes
0.771 MCC (16-class long-sequence RVDB dataset, chunk-scored)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

DNABERT-2ᵃ on the RVDB long-sequence dataset, 16 classes

gfm2-20261011-buzkova2026-protocol-long

Aggregation: Not reported

Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 10, row 'DNABERT-2ᵃ', column 'MCC'
Configuration: DNABERT-2, frozen embeddings, pooling not stated, 1-NN, long-sequence run (Bůžková et al. 2026)Protocol: RVDB long-sequence viral classification, 16 classes (Bůžková et al. 2026 Table 10)
Dataset: RVDB C-RVDB v31.0 long-sequence dataset, 16 classes
0.814 Precision (16-class long-sequence RVDB dataset, chunk-scored, macro-averaged over classes)
fraction · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

DNABERT-2ᵃ on the RVDB long-sequence dataset, 16 classes

gfm2-20261011-buzkova2026-protocol-long

Aggregation: Not reported

Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 10, row 'DNABERT-2ᵃ', column 'Precision'
Configuration: DNABERT-2, frozen embeddings, pooling not stated, 1-NN, long-sequence run (Bůžková et al. 2026)Protocol: RVDB long-sequence viral classification, 16 classes (Bůžková et al. 2026 Table 10)
Dataset: RVDB C-RVDB v31.0 long-sequence dataset, 16 classes
0.817 Recall (16-class long-sequence RVDB dataset, chunk-scored, macro-averaged over classes)
fraction · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

DNABERT-2ᵃ on the RVDB long-sequence dataset, 16 classes

gfm2-20261011-buzkova2026-protocol-long

Aggregation: Not reported

Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 10, row 'DNABERT-2ᵃ', column 'Recall'
Configuration: NTv2-250M, frozen embeddings, pooling not stated, 1-NN, long-sequence run (Bůžková et al. 2026)Protocol: RVDB long-sequence viral classification, 16 classes (Bůžková et al. 2026 Table 10)
Dataset: RVDB C-RVDB v31.0 long-sequence dataset, 16 classes
0.831 Accuracy (16-class long-sequence RVDB dataset, chunk-scored)
fraction · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

NTv2-250Mᵃ on the RVDB long-sequence dataset, 16 classes

gfm2-20261011-buzkova2026-protocol-long

Aggregation: Not reported

Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 10, row 'NTv2-250Mᵃ', column 'Accuracy'
Configuration: NTv2-250M, frozen embeddings, pooling not stated, 1-NN, long-sequence run (Bůžková et al. 2026)Protocol: RVDB long-sequence viral classification, 16 classes (Bůžková et al. 2026 Table 10)
Dataset: RVDB C-RVDB v31.0 long-sequence dataset, 16 classes
0.844 Balanced accuracy (16-class long-sequence RVDB dataset, chunk-scored)
fraction · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

NTv2-250Mᵃ on the RVDB long-sequence dataset, 16 classes

gfm2-20261011-buzkova2026-protocol-long

Aggregation: Not reported

Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 10, row 'NTv2-250Mᵃ', column 'Bal. Acc.'
Configuration: NTv2-250M, frozen embeddings, pooling not stated, 1-NN, long-sequence run (Bůžková et al. 2026)Protocol: RVDB long-sequence viral classification, 16 classes (Bůžková et al. 2026 Table 10)
Dataset: RVDB C-RVDB v31.0 long-sequence dataset, 16 classes
0.842 Macro F1 (16-class long-sequence RVDB dataset, chunk-scored)
fraction · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

NTv2-250Mᵃ on the RVDB long-sequence dataset, 16 classes

gfm2-20261011-buzkova2026-protocol-long

Aggregation: Not reported

Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 10, row 'NTv2-250Mᵃ', column 'F1'
Configuration: NTv2-250M, frozen embeddings, pooling not stated, 1-NN, long-sequence run (Bůžková et al. 2026)Protocol: RVDB long-sequence viral classification, 16 classes (Bůžková et al. 2026 Table 10)
Dataset: RVDB C-RVDB v31.0 long-sequence dataset, 16 classes
0.818 MCC (16-class long-sequence RVDB dataset, chunk-scored)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

NTv2-250Mᵃ on the RVDB long-sequence dataset, 16 classes

gfm2-20261011-buzkova2026-protocol-long

Aggregation: Not reported

Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 10, row 'NTv2-250Mᵃ', column 'MCC'
Configuration: NTv2-250M, frozen embeddings, pooling not stated, 1-NN, long-sequence run (Bůžková et al. 2026)Protocol: RVDB long-sequence viral classification, 16 classes (Bůžková et al. 2026 Table 10)
Dataset: RVDB C-RVDB v31.0 long-sequence dataset, 16 classes
0.844 Precision (16-class long-sequence RVDB dataset, chunk-scored, macro-averaged over classes)
fraction · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

NTv2-250Mᵃ on the RVDB long-sequence dataset, 16 classes

gfm2-20261011-buzkova2026-protocol-long

Aggregation: Not reported

Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 10, row 'NTv2-250Mᵃ', column 'Precision'
Configuration: NTv2-250M, frozen embeddings, pooling not stated, 1-NN, long-sequence run (Bůžková et al. 2026)Protocol: RVDB long-sequence viral classification, 16 classes (Bůžková et al. 2026 Table 10)
Dataset: RVDB C-RVDB v31.0 long-sequence dataset, 16 classes
0.844 Recall (16-class long-sequence RVDB dataset, chunk-scored, macro-averaged over classes)
fraction · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

NTv2-250Mᵃ on the RVDB long-sequence dataset, 16 classes

gfm2-20261011-buzkova2026-protocol-long

Aggregation: Not reported

Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 10, row 'NTv2-250Mᵃ', column 'Recall'
Configuration: NTv2-50M, frozen embeddings, pooling not stated, 1-NN, long-sequence run (Bůžková et al. 2026)Protocol: RVDB long-sequence viral classification, 16 classes (Bůžková et al. 2026 Table 10)
Dataset: RVDB C-RVDB v31.0 long-sequence dataset, 16 classes
0.853 Accuracy (16-class long-sequence RVDB dataset, chunk-scored)
fraction · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

NTv2-50Mᵃ on the RVDB long-sequence dataset, 16 classes

gfm2-20261011-buzkova2026-protocol-long

Aggregation: Not reported

Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 10, row 'NTv2-50Mᵃ', column 'Accuracy'
Configuration: NTv2-50M, frozen embeddings, pooling not stated, 1-NN, long-sequence run (Bůžková et al. 2026)Protocol: RVDB long-sequence viral classification, 16 classes (Bůžková et al. 2026 Table 10)
Dataset: RVDB C-RVDB v31.0 long-sequence dataset, 16 classes
0.87 Balanced accuracy (16-class long-sequence RVDB dataset, chunk-scored)
fraction · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

NTv2-50Mᵃ on the RVDB long-sequence dataset, 16 classes

gfm2-20261011-buzkova2026-protocol-long

Aggregation: Not reported

Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 10, row 'NTv2-50Mᵃ', column 'Bal. Acc.'
Configuration: NTv2-50M, frozen embeddings, pooling not stated, 1-NN, long-sequence run (Bůžková et al. 2026)Protocol: RVDB long-sequence viral classification, 16 classes (Bůžková et al. 2026 Table 10)
Dataset: RVDB C-RVDB v31.0 long-sequence dataset, 16 classes
0.869 Macro F1 (16-class long-sequence RVDB dataset, chunk-scored)
fraction · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

NTv2-50Mᵃ on the RVDB long-sequence dataset, 16 classes

gfm2-20261011-buzkova2026-protocol-long

Aggregation: Not reported

Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 10, row 'NTv2-50Mᵃ', column 'F1'
Configuration: NTv2-50M, frozen embeddings, pooling not stated, 1-NN, long-sequence run (Bůžková et al. 2026)Protocol: RVDB long-sequence viral classification, 16 classes (Bůžková et al. 2026 Table 10)
Dataset: RVDB C-RVDB v31.0 long-sequence dataset, 16 classes
0.842 MCC (16-class long-sequence RVDB dataset, chunk-scored)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

NTv2-50Mᵃ on the RVDB long-sequence dataset, 16 classes

gfm2-20261011-buzkova2026-protocol-long

Aggregation: Not reported

Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 10, row 'NTv2-50Mᵃ', column 'MCC'
Configuration: NTv2-50M, frozen embeddings, pooling not stated, 1-NN, long-sequence run (Bůžková et al. 2026)Protocol: RVDB long-sequence viral classification, 16 classes (Bůžková et al. 2026 Table 10)
Dataset: RVDB C-RVDB v31.0 long-sequence dataset, 16 classes
0.871 Precision (16-class long-sequence RVDB dataset, chunk-scored, macro-averaged over classes)
fraction · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

NTv2-50Mᵃ on the RVDB long-sequence dataset, 16 classes

gfm2-20261011-buzkova2026-protocol-long

Aggregation: Not reported

Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 10, row 'NTv2-50Mᵃ', column 'Precision'
Configuration: NTv2-50M, frozen embeddings, pooling not stated, 1-NN, long-sequence run (Bůžková et al. 2026)Protocol: RVDB long-sequence viral classification, 16 classes (Bůžková et al. 2026 Table 10)
Dataset: RVDB C-RVDB v31.0 long-sequence dataset, 16 classes
0.87 Recall (16-class long-sequence RVDB dataset, chunk-scored, macro-averaged over classes)
fraction · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

NTv2-50Mᵃ on the RVDB long-sequence dataset, 16 classes

gfm2-20261011-buzkova2026-protocol-long

Aggregation: Not reported

Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 10, row 'NTv2-50Mᵃ', column 'Recall'
Configuration: NTv3-650M, frozen embeddings, pooling not stated, 1-NN, long-sequence run (Bůžková et al. 2026)Protocol: RVDB long-sequence viral classification, 16 classes (Bůžková et al. 2026 Table 10)
Dataset: RVDB C-RVDB v31.0 long-sequence dataset, 16 classes
0.953 Accuracy (16-class long-sequence RVDB dataset)
fraction · higher

Uncertainty: 95% CI 0.920 to 0.973. Wilson binomial interval quoted in Section 3.8; method stated in Section 2.9

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

NTv3-650M on the RVDB long-sequence dataset, 16 classes

gfm2-20261011-buzkova2026-protocol-long

Aggregation: Not reported

Analyzing Genomic Foundation Models for Viral Sequence Identification · Table 10, row 'NTv3-650M', column 'Accuracy'

Source checking is not independent reproduction. Release 2026-11-02-a7f03c9e55a5.

Research readiness

0 of 4 readiness checks met. These checks assess whether the evidence supports a reproducible investigation; a source-checked score alone does not meet them.

Readiness checks, gaps and artifacts

Release 2026-11-02-a7f03c9e55a5 · Evidence verified: Not verified

Evidence incomplete

Replay metrics

Exact outcomes, predictions, identifiers and evaluator are connected.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Metrics are recomputed from the saved predictions: not yet verified

Verified: Not verified

Evidence incomplete

Investigate discrepancies

Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Metrics are recomputed from the saved predictions: not yet verified
  • Sample annotations are recorded: not yet verified
  • Dependence between samples is assessed: not yet verified

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • A pinned run recipe exists: not yet verified
  • Compute requirements are estimated: not yet verified

Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Independent validation data exist: not yet verified
  • Overlap with training data is checked: not yet verified

Verified: Not verified

Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.

Artifacts and reproduction

No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Dataset and evaluation context

A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

6 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statementOriginal source and locationReview and provenance
Population
About 320 sequences; 256 test queries
Context-only references
Analyzing Genomic Foundation Models for Viral Sequence Identification

Original source ↗

Section 2.2; Table 1 column 'Long-sequence dataset'; Table 10 legend

Version: bioRxiv v1, posted 2026-09-28
Retrieved: 2026-10-11T00:48:35Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.population

Source artifact SHA-256: 9a589a2088f8466502b1035228db3e594065e984e5755c25d907471225f75c19

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Source location
Section 2.2; Table 1 column 'Long-sequence dataset'; Table 10 legend
Context-only references
Analyzing Genomic Foundation Models for Viral Sequence Identification

Original source ↗

Section 2.2; Table 1 column 'Long-sequence dataset'; Table 10 legend

Version: bioRxiv v1, posted 2026-09-28
Retrieved: 2026-10-11T00:48:35Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.source_locator

Source artifact SHA-256: 9a589a2088f8466502b1035228db3e594065e984e5755c25d907471225f75c19

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Split
About 4 indexed and about 16 queried sequences per class; 256 test sequences
Context-only references
Analyzing Genomic Foundation Models for Viral Sequence Identification

Original source ↗

Section 2.2; Table 1 column 'Long-sequence dataset'; Table 10 legend

Version: bioRxiv v1, posted 2026-09-28
Retrieved: 2026-10-11T00:48:35Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.split

Source artifact SHA-256: 9a589a2088f8466502b1035228db3e594065e984e5755c25d907471225f75c19

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Version
C-RVDB v31.0, 9 January 2026
Context-only references
Analyzing Genomic Foundation Models for Viral Sequence Identification

Original source ↗

Section 2.2; Table 1 column 'Long-sequence dataset'; Table 10 legend

Version: bioRxiv v1, posted 2026-09-28
Retrieved: 2026-10-11T00:48:35Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.version

Source artifact SHA-256: 9a589a2088f8466502b1035228db3e594065e984e5755c25d907471225f75c19

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Description
Viral sequences above 50,000 bp (test sequences 84,587 to 409,110 bp) from 16 manually reviewed classes, with the split inverted to about 20% indexed and 80% queried.
Context-only references
Analyzing Genomic Foundation Models for Viral Sequence Identification

Original source ↗

Section 2.2; Table 1 column 'Long-sequence dataset'; Table 10 legend

Version: bioRxiv v1, posted 2026-09-28
Retrieved: 2026-10-11T00:48:35Z

not individually reviewed

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: 9a589a2088f8466502b1035228db3e594065e984e5755c25d907471225f75c19

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Name
RVDB C-RVDB v31.0 long-sequence dataset, 16 classes
Context-only references
Analyzing Genomic Foundation Models for Viral Sequence Identification

Original source ↗

Section 2.2; Table 1 column 'Long-sequence dataset'; Table 10 legend

Version: bioRxiv v1, posted 2026-09-28
Retrieved: 2026-10-11T00:48:35Z

not individually reviewed

No individual claim review recorded

Audit details

Field: name

Source artifact SHA-256: 9a589a2088f8466502b1035228db3e594065e984e5755c25d907471225f75c19

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

1 source record and release historyDownload this release (gzip)
Technical metadata and extraction receipts

Stable ID: gfm2-20261011-buzkova2026-data-rvdb-long

areas
dna-genomes
contexts
research
version
C-RVDB v31.0, 9 January 2026
split
About 4 indexed and about 16 queried sequences per class; 256 test sequences
population
About 320 sequences; 256 test queries
source locator
Section 2.2; Table 1 column 'Long-sequence dataset'; Table 10 legend
missing metadata
total: reason: unreported; note: Table 1 prints 'about 320 (about 64 indexed, 256 queried)'
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