Embed. ESM-1v
Supervised fitness predictor evaluated by the ProteinGym authors. The leading term is the input representation the paper's model type column gives.
Overview
Supervised fitness predictor evaluated by the ProteinGym authors. The leading term is the input representation the paper's model type column gives.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
4 evaluations · 8 results. Different protocols are not a single leaderboard.
Filter evaluations
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Embed. ESM-1v | Task: ProteinGym SUP-SUB-MSE-AVG: Supervised substitutions, average over splits, MSE Dataset subset: ProteinGym substitution DMS assays (ProteinGym split) | 0.787 mse error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceEmbed. ESM-1v on ProteinGym SUP-SUB-MSE-AVG: Supervised substitutions, average over splits, MSE Supervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 3, row(Embed. ESM-1v), column(Supervised substitutions, average over splits, MSE) |
| Configuration: Embed. ESM-1v | Task: ProteinGym SUP-SUB-MSE-CONTIG: Supervised substitutions, contiguous split, MSE Dataset subset: ProteinGym substitution DMS assays (ProteinGym split) | 0.937 mse error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceEmbed. ESM-1v on ProteinGym SUP-SUB-MSE-CONTIG: Supervised substitutions, contiguous split, MSE Supervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 3, row(Embed. ESM-1v), column(Supervised substitutions, contiguous split, MSE) |
| Configuration: Embed. ESM-1v | Task: ProteinGym SUP-SUB-MSE-MOD: Supervised substitutions, modulo split, MSE Dataset subset: ProteinGym substitution DMS assays (ProteinGym split) | 0.861 mse error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceEmbed. ESM-1v on ProteinGym SUP-SUB-MSE-MOD: Supervised substitutions, modulo split, MSE Supervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 3, row(Embed. ESM-1v), column(Supervised substitutions, modulo split, MSE) |
| Configuration: Embed. ESM-1v | Task: ProteinGym SUP-SUB-MSE-RAND: Supervised substitutions, random split, MSE Dataset subset: ProteinGym substitution DMS assays (ProteinGym split) | 0.563 mse error · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceEmbed. ESM-1v on ProteinGym SUP-SUB-MSE-RAND: Supervised substitutions, random split, MSE Supervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 3, row(Embed. ESM-1v), column(Supervised substitutions, random split, MSE) |
| Configuration: Embed. ESM-1v | Task: ProteinGym SUP-SUB-SPEARMAN-AVG: Supervised substitutions, average over splits, Spearman Dataset subset: ProteinGym substitution DMS assays (ProteinGym split) | 0.542 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSupervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 3, row(Embed. ESM-1v), column(Supervised substitutions, average over splits, Spearman) |
| Configuration: Embed. ESM-1v | Task: ProteinGym SUP-SUB-SPEARMAN-CONTIG: Supervised substitutions, contiguous split, Spearman Dataset subset: ProteinGym substitution DMS assays (ProteinGym split) | 0.481 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSupervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 3, row(Embed. ESM-1v), column(Supervised substitutions, contiguous split, Spearman) |
| Configuration: Embed. ESM-1v | Task: ProteinGym SUP-SUB-SPEARMAN-MOD: Supervised substitutions, modulo split, Spearman Dataset subset: ProteinGym substitution DMS assays (ProteinGym split) | 0.506 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceEmbed. ESM-1v on ProteinGym SUP-SUB-SPEARMAN-MOD: Supervised substitutions, modulo split, Spearman Supervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 3, row(Embed. ESM-1v), column(Supervised substitutions, modulo split, Spearman) |
| Configuration: Embed. ESM-1v | Task: ProteinGym SUP-SUB-SPEARMAN-RAND: Supervised substitutions, random split, Spearman Dataset subset: ProteinGym substitution DMS assays (ProteinGym split) | 0.639 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceEmbed. ESM-1v on ProteinGym SUP-SUB-SPEARMAN-RAND: Supervised substitutions, random split, Spearman Supervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 3, row(Embed. ESM-1v), column(Supervised substitutions, random split, Spearman) |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
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How it works, versions and access
Underlying model: ESM-1v. Results on this page belong to this configuration and its evaluated settings.
Strengths, limitations and unresolved questions
Evidence
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Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: uses model discovery-model-esm-1v Individual claims | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Section 4.2 Supervised benchmarks, Baselines; Table 3 Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | source checked automated source review · 2026-09-23 Audit detailsSource review establishes this relationship only. Exact evaluated configurations and original numerical review status remain unchanged. These supervised estimators consume ESM-1v predictions and/or embeddings alongside other features. The full estimator uses ESM-1v; it is not identical to ESM-1v. Field: Claim: model-evaluation-identity-c77e9805717e0e6ed629 Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
View linked audit checks and correction history
Release 2026-09-29-06401fd5b220 · Record review: source checked
1 source records and release history
- ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: proteingym-method-embed-esm-1v
- areas
- proteins-complexes
- source locator
- Table 3, row(Embed. ESM-1v)
- missing metadata
- checkpoint revision: unreported; parameters: unextracted
Related records
- uses model: ESM-1v
- subject: Embed. ESM-1v: uses model ESM-1v
- model: Embed. ESM-1v on ProteinGym SUP-SUB-MSE-AVG: Supervised substitutions, average over splits, MSE
- model: Embed. ESM-1v on ProteinGym SUP-SUB-MSE-CONTIG: Supervised substitutions, contiguous split, MSE
- model: Embed. ESM-1v on ProteinGym SUP-SUB-MSE-MOD: Supervised substitutions, modulo split, MSE
- model: Embed. ESM-1v on ProteinGym SUP-SUB-MSE-RAND: Supervised substitutions, random split, MSE
- model: Embed. ESM-1v on ProteinGym SUP-SUB-SPEARMAN-AVG: Supervised substitutions, average over splits, Spearman
- model: Embed. ESM-1v on ProteinGym SUP-SUB-SPEARMAN-CONTIG: Supervised substitutions, contiguous split, Spearman
- model: Embed. ESM-1v on ProteinGym SUP-SUB-SPEARMAN-MOD: Supervised substitutions, modulo split, Spearman
- model: Embed. ESM-1v on ProteinGym SUP-SUB-SPEARMAN-RAND: Supervised substitutions, random split, Spearman