Strengths and considerations
No source-reviewed explanatory claims are recorded here yet.
Configuration
ESM2 8M
ESM2 8M as evaluated in the cited study. Paper-specific evaluated pipeline; exact checkpoint not inferred from label
Sources
Protein Language Models Expose Viral Immune Mimicry · Table 1, row ESM2 8M, column AUC (%); XML row4 column2Overview
Key specifications have not been extracted for this record. See the linked evaluation and sources for the reported setup.
limited source coverage · Automated source review, 2026-09-17. All specifications and missing details
Evaluations and results
1 evaluation · 4 results. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: ESM2 8M | Protocol: Held-out human-versus-virus protein classification (human-versus-viral protein classification) Dataset: human and viral proteins | 92.2% Prec. percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2 8M: Held-out human-versus-virus protein classification Compare protein origin classifiers; T 5 embeddings plus linear/tree models vs ESM 2 fine-tuning and simple controls. UniRef90 deduplication; proteins longer than1,600 residues excluded; UniRef50 clusters assigned80% training and20% test with no cluster shared. Separate four-fold error-analysis experiment not assigned toTable1. Aggregation: Not reported Protein Language Models Expose Viral Immune Mimicry · Table 1, row ESM2 8M, column Prec.; XML row4 column4 |
| Configuration: ESM2 8M | Protocol: Held-out human-versus-virus protein classification (human-versus-viral protein classification) Dataset: human and viral proteins | 92.3% Recall percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2 8M: Held-out human-versus-virus protein classification Compare protein origin classifiers; T 5 embeddings plus linear/tree models vs ESM 2 fine-tuning and simple controls. UniRef90 deduplication; proteins longer than1,600 residues excluded; UniRef50 clusters assigned80% training and20% test with no cluster shared. Separate four-fold error-analysis experiment not assigned toTable1. Aggregation: Not reported Protein Language Models Expose Viral Immune Mimicry · Table 1, row ESM2 8M, column Recall; XML row4 column5 |
| Configuration: ESM2 8M | Protocol: Held-out human-versus-virus protein classification (human-versus-viral protein classification) Dataset: human and viral proteins | 98.1% AUROC percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2 8M: Held-out human-versus-virus protein classification Compare protein origin classifiers; T 5 embeddings plus linear/tree models vs ESM 2 fine-tuning and simple controls. UniRef90 deduplication; proteins longer than1,600 residues excluded; UniRef50 clusters assigned80% training and20% test with no cluster shared. Separate four-fold error-analysis experiment not assigned toTable1. Aggregation: Not reported Protein Language Models Expose Viral Immune Mimicry · Table 1, row ESM2 8M, column AUC (%); XML row4 column2 |
| Configuration: ESM2 8M | Protocol: Held-out human-versus-virus protein classification (human-versus-viral protein classification) Dataset: human and viral proteins | 94.7% Accur. percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2 8M: Held-out human-versus-virus protein classification Compare protein origin classifiers; T 5 embeddings plus linear/tree models vs ESM 2 fine-tuning and simple controls. UniRef90 deduplication; proteins longer than1,600 residues excluded; UniRef50 clusters assigned80% training and20% test with no cluster shared. Separate four-fold error-analysis experiment not assigned toTable1. Aggregation: Not reported Protein Language Models Expose Viral Immune Mimicry · Table 1, row ESM2 8M, column Accur.; XML row4 column3 |
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How it works, versions and access
Related profile: ESM-2. This page retains the exact record and its evaluation context.
How it works
Evaluation in this paper
Paper-specific evaluated pipeline; exact checkpoint not inferred from label
Sources
Protein Language Models Expose Viral Immune Mimicry · Table 1, row ESM2 8M, column AUC (%); XML row4 column2Strengths, limitations and unresolved questions
Strengths and limitations
Limitations and conditions
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Profile review details
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Stable record: paper-model-6cb80dfa2a3b65637aSpecifications
Inputs, training, access and other details
Explanatory profile: limited source coverage · Automated source review, 2026-09-17. Review applies to the cited claims; unresolved fields are listed below. Numerical results retain their own review status.
| Property | Description and evidence |
|---|---|
| Model type | Not extracted or verified for this record. |
| Inputs | Not extracted or verified for this record. |
| Outputs | Not extracted or verified for this record. |
| Parameters | Not extracted or verified for this record. |
| Known versions | Not extracted or verified for this record. |
| Training data | Not extracted or verified for this record. |
| Context limits | Not extracted or verified for this record. |
| Access | Not extracted or verified for this record. |
| Code licence | Not extracted or verified for this record. |
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Evidence
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Evidence table
Inspect claims, sources and review details
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One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
4 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Evaluation in this paper Paper-specific evaluated pipeline; exact checkpoint not inferred from label Individual claims | Protein Language Models Expose Viral Immune Mimicry Table 1, row ESM2 8M, column AUC (%); XML row4 column2 Version: version of record | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated review. No human sign-off or experimental reproduction. Field: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Introduction ESM2 8M as evaluated in the cited study. Paper-specific evaluated pipeline; exact checkpoint not inferred from label Individual claims | Protein Language Models Expose Viral Immune Mimicry Table 1, row ESM2 8M, column AUC (%); XML row4 column2 Version: version of record | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated review. No human sign-off or experimental reproduction. Field: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: family catalog-model-esm-2 Individual claims | Protein Language Models Expose Viral Immune Mimicry Methods: pretrained ESM2 variants and fine-tuning; results table row ESM2 8M Version: version of record | source checked automated source review · 2026-09-23 Audit detailsSource review establishes this relationship only. Exact evaluated configurations and original numerical review status remain unchanged. Original study explicitly distinguishes8M/35M/150M/650M fine-tuned configurations; only the8M row supports the size-qualified target. Field: Claim: model-evaluation-identity-255b8b3c0efd930e09bb Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: family discovery-model-esm-2 Individual claims | Protein Language Models Expose Viral Immune Mimicry Methods: ESM2 models, mean pooling and fine-tuning; result rows 8M/35M/150M/650M Version: version of record | source checked automated source review · 2026-09-23 Audit detailsSource review establishes this relationship only. Exact evaluated configurations and original numerical review status remain unchanged. Source explicitly fine-tunes the pretrained ESM2 models for human-versus-virus protein classification. Preserve parameter size and study split. Field: Claim: model-evaluation-identity-75e1e05d841b1272be29 Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
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Release 2026-09-29-06401fd5b220 · Record review: needs review
1 source records and release history
- Protein Language Models Expose Viral Immune Mimicry · Original source · version of record
Technical metadata and extraction receipts
Stable ID: paper-model-6cb80dfa2a3b65637a
- areas
- proteins-complexes
- tasks
- human-versus-viral protein classification
- entity level
- method
- configuration type
- reported_configuration
- version
- Paper-specific evaluated pipeline; exact checkpoint not inferred from label
- legacy kinds
- model
- entity classification
- review date: 2026-09-17; rationale: This source-scoped entry preserves the method/configuration actually named in an evaluation. It is neither a global family identity nor proof of an immutable checkpoint; the linked evaluation retains adaptation, fitting and scoring details.; source ids: part2-viral-immune-mimicry-2025; source locator: Table 1, row ESM2 8M, column AUC (%); XML row4 column2; ambiguities: Configuration means the source-labelled evaluated identity. It does not establish missing checkpoint hashes, default settings or equivalence to same-named records in other papers.
Related records
- family: ESM-2
- family: ESM-2
- subject: ESM2 8M: family ESM-2
- subject: ESM2 8M: family ESM-2
- model: ESM2 8M: Held-out human-versus-virus protein classification