Configuration

UCSF respiratory RNA mNGS original-testing sensitivity tested configuration

UCSF respiratory RNA mNGS original-testing sensitivity tested configuration; bounded primary-source candidate.

Overview

UCSF respiratory RNA mNGS original-testing sensitivity tested configuration; bounded primary-source candidate.

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Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: UCSF respiratory RNA mNGS original-testing sensitivity tested configuration	Protocol: UCSF respiratory RNA mNGS original-testing sensitivity protocol Dataset: UCSF respiratory RNA mNGS original-testing sensitivity cohort	93.6% (103 of 110) sensitivity_against_original_rvp_testing percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source UCSF respiratory RNA mNGS original-testing sensitivity amp-20261007-rna-pathogens-protocol Aggregation: Not reported Tan et al., Nature Communications 15, 9016 (2024) · PMC11558004 Results paragraph Par15; Table 1 Tab1 Accuracy / Original testing; Fig. 6A. Methods Par34 and Par38 define reference assays and mixed-target weighting.

Source checking is not independent reproduction. Release 2026-10-07-1448159e6a81.

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Claims, original sources and review scope · Release 2026-10-07-1448159e6a81
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Release 2026-10-07-1448159e6a81 · Record review: source checked

1 source records and release history

Tan et al., Nature Communications 15, 9016 (2024) · Original source · Tan et al., Nature Communications 15, 9016 (2024)

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Technical metadata and extraction receipts

Stable ID: amp-20261007-rna-pathogens-configuration

areas: rna-transcriptomes
method types: conventional_pipeline
tasks: pathogen_detection
foundation model eligible: false
missing metadata: version: Source workflow described; immutable executable version not fully pinned
reported name: RNA isolation with DNase, rRNA depletion and cDNA synthesis; Tecan MagicPrep NGS; Illumina MiniSeq/NextSeq; SURPI+ container v1.0.0, SNAP edit distance 16 against March 2019 NCBI NT viral reference augmented by SARS-CoV-2 NC_045512.
version: Not reported

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configuration: UCSF respiratory RNA mNGS original-testing sensitivity

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