93.6% (103 of 110) sensitivity_against_original_rvp_testing
UCSF respiratory RNA mNGS original-testing sensitivity reported endpoint
- Tested configuration
- UCSF respiratory RNA mNGS original-testing sensitivity tested configuration
- Protocol
- UCSF respiratory RNA mNGS original-testing sensitivity protocol
- Dataset
- UCSF respiratory RNA mNGS original-testing sensitivity cohort
- Procedure
- amp-20261007-rna-pathogens-protocol
- Evaluation
- UCSF respiratory RNA mNGS original-testing sensitivity
- Coverage
- scored: unreported; eligible: unreported
- Uncertainty
- Not reported
- Evidence
- Author-reported evaluation · source checkedTan et al., Nature Communications 15, 9016 (2024) · PMC11558004 Results paragraph Par15; Table 1 Tab1 Accuracy / Original testing; Fig. 6A. Methods Par34 and Par38 define reference assays and mixed-target weighting.
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.
Reproduction
- Split
- Residual clinical accuracy cohort; no model training/test split reported
- Adaptation
- Conventional sequence alignment pipeline; no foundation-model adaptation
- Scoring implementation
- sensitivity_against_original_rvp_testing
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result 93.6% (103 of 110) Individual claims | Tan et al., Nature Communications 15, 9016 (2024) PMC11558004 Results paragraph Par15; Table 1 Tab1 Accuracy / Original testing; Fig. 6A. Methods Par34 and Par38 define reference assays and mixed-target weighting. Version: Tan et al., Nature Communications 15, 9016 (2024) | source checked automated source review · 2026-10-07T12:29:33.932238+00:00 author reported Audit detailsCandidate extraction only; parent independent review required. No independent replication or human scientific review. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
View linked audit checks and correction history
Release 2026-10-07-1448159e6a81 · Record review: source checked
1 source records and release history
- Tan et al., Nature Communications 15, 9016 (2024) · Original source · Tan et al., Nature Communications 15, 9016 (2024)
Technical metadata and extraction receipts
Stable ID: amp-20261007-rna-pathogens-result
- areas
- rna-transcriptomes
- method types
- conventional_pipeline
- tasks
- pathogen_detection
- denominator
- 110
- metric
- sensitivity_against_original_rvp_testing
- metric direction
- higher
- missing metadata
- uncertainty: Not reported/extracted for this scoped endpoint
- numerator
- 103
- numeric value
- 93.6
- printed value
- 93.6% (103 of 110)
- review
- method: automated_source_review; notes: Candidate extraction only; parent independent review required. No independent replication or human scientific review.; reviewed at: 2026-10-07T12:29:33.932238+00:00; reviewer: Codex pathogens-fragmentomics evidence worker
- source locator
- PMC11558004 Results paragraph Par15; Table 1 Tab1 Accuracy / Original testing; Fig. 6A. Methods Par34 and Par38 define reference assays and mixed-target weighting.
- uncertainty
- Not reported
- unit
- percent