Configuration

harmony_embed · hvg, unscaled

Entry in scIB, identified only by its entry label; the model or method behind it is not identified.

Overview

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Evaluations and results

1 evaluation · 12 results. Different protocols are not a single leaderboard.

Protocol: scIB official RNA metrics export · pancreas · Dataset subset: pancreas

Sorted by Adjusted rand index (clusters vs cell-type labels) (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.

Tested configuration	Adjusted rand index (clusters vs cell-type labels)	Normalized mutual information (clusters vs cell-type labels)	Scib asw batch	Scib asw label	Scib cell cycle conservation	Scib clisi	Scib graph connectivity	Scib ilisi	Scib isolated label F1	Scib isolated label silhouette	Scib kbet	Scib pcr batch
harmony_embed · hvg, unscaledEvaluation	0.936	0.903	0.895	0.661	0.678	1	0.976	0.367	0.0864	0.624	0.6	0.921

All 12 result rows with coverage, uncertainty and sources

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Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: harmony_embed · hvg, unscaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.624 Scib isolated label silhouette unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source harmony_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 182, column 9 (isolated_label_silhouette)
Configuration: harmony_embed · hvg, unscaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.6 Scib kbet unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source harmony_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 182, column 11 (kBET)
Configuration: harmony_embed · hvg, unscaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.921 Scib pcr batch unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source harmony_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 182, column 6 (PCR_batch)
Configuration: harmony_embed · hvg, unscaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.661 Scib asw label unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source harmony_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 182, column 4 (ASW_label)
Configuration: harmony_embed · hvg, unscaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.367 Scib ilisi unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source harmony_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 182, column 12 (iLISI)
Configuration: harmony_embed · hvg, unscaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.936 Adjusted rand index (clusters vs cell-type labels) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source harmony_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 182, column 3 (ARI_cluster/label)
Configuration: harmony_embed · hvg, unscaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.895 Scib asw batch unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source harmony_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 182, column 5 (ASW_label/batch)
Configuration: harmony_embed · hvg, unscaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	1 Scib clisi unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source harmony_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 182, column 13 (cLISI)
Configuration: harmony_embed · hvg, unscaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.0864 Scib isolated label F1 unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source harmony_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 182, column 8 (isolated_label_F1)
Configuration: harmony_embed · hvg, unscaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.678 Scib cell cycle conservation unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source harmony_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 182, column 7 (cell_cycle_conservation)
Configuration: harmony_embed · hvg, unscaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.976 Scib graph connectivity unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source harmony_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 182, column 10 (graph_conn)
Configuration: harmony_embed · hvg, unscaled	Protocol: scIB official RNA metrics export · pancreas Dataset subset: pancreas	0.903 Normalized mutual information (clusters vs cell-type labels) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source harmony_embed · scIB official RNA metrics export · pancreas scIB official RNA metrics export Aggregation: unreported scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · data/metrics.csv row 182, column 2 (NMI_cluster/label)

Source checking is not independent reproduction. Release 2026-11-02-a7f03c9e55a5.

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Evidence

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Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
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Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: discovered

1 source record and release history

scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f · Original source · 3afbffd3674726e5146797be21cf6bd7470a2c5f

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Technical metadata and extraction receipts

Stable ID: acquired-configuration-879da2c3fed62949248e

source locator: data/metrics.csv row 182, column 2 (NMI_cluster/label)
reported configuration: harmony_embed
missing metadata: checkpoint revision: reason: unreported; model family: reason: unextracted
provenance note: Exact source-reported configuration or submission label. Family membership, checkpoint identity and aliases have not been inferred.

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system: harmony_embed · scIB official RNA metrics export · pancreas

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