Jores plant promoter prediction study
Original 2021 study comparing GC/motif linear regression and CNN under maize-protoplast and tobacco-leaf reporter conditions.
Overview
Original 2021 study comparing GC/motif linear regression and CNN under maize-protoplast and tobacco-leaf reporter conditions.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
4 recorded evaluations, 4 metric rows. A comparison chart has not yet been validated for these results. The table retains the individual findings and their sources.
Results
Results are available, but no reviewed comparison panel is linked in this release.
All evaluations
4 evaluations · 4 results. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Jores maize-protoplasts cnn | Protocol: Jores 2021 promoter strength: maize-protoplasts Dataset subset: Jores 10% promoter holdout: maize-protoplasts | 0.67 pearson_r_squared dimensionless · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported Jores et al. 2021 plant core promoter models · Figure 8b, maize-protoplasts panel; p849 Computational models predict and improve promoter strength |
| Configuration: Jores maize-protoplasts gc-motif-linear | Protocol: Jores 2021 promoter strength: maize-protoplasts Dataset subset: Jores 10% promoter holdout: maize-protoplasts | 0.45 pearson_r_squared dimensionless · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceJores maize-protoplasts gc-motif-linear Not reported Aggregation: Not reported Jores et al. 2021 plant core promoter models · Figure 8a, maize-protoplasts panel; p849 Computational models predict and improve promoter strength |
| Configuration: Jores tobacco-leaves cnn | Protocol: Jores 2021 promoter strength: tobacco-leaves Dataset subset: Jores 10% promoter holdout: tobacco-leaves | 0.71 pearson_r_squared dimensionless · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported Jores et al. 2021 plant core promoter models · Figure 8b, tobacco-leaves panel; p849 Computational models predict and improve promoter strength |
| Configuration: Jores tobacco-leaves gc-motif-linear | Protocol: Jores 2021 promoter strength: tobacco-leaves Dataset subset: Jores 10% promoter holdout: tobacco-leaves | 0.51 pearson_r_squared dimensionless · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceJores tobacco-leaves gc-motif-linear Not reported Aggregation: Not reported Jores et al. 2021 plant core promoter models · Figure 8a, tobacco-leaves panel; p849 Computational models predict and improve promoter strength |
Source checking is not independent reproduction. Release 2026-09-30-e37e3ab1284d.
Methods and evaluation design
Procedure, tasks and evaluated configurations
Evaluation design
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Protocols
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Baseline coverage
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Baseline status by linked protocol
- Jores 2021 promoter strength: maize-protoplasts · 0/2 roles measured
- Jores 2021 promoter strength: tobacco-leaves · 0/2 roles measured
Protocol coverage CSV · Model evaluation matrix · Source table · Release and checksums
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Strengths, limitations and unresolved questions
Evidence
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Evidence table
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Sources and history
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Release 2026-09-30-e37e3ab1284d · Record review: source checked
1 source records and release history
- Jores et al. 2021 plant core promoter models · Original source · Nature Plants 7:842–855, 2021; author-hosted version of record
Technical metadata and extraction receipts
Stable ID: uc20260930-benchmark-jores-promoters
- areas
- dna-genomes
- entity level
- suite
- source locator
- Figure 8a,b; Computational modelling of promoter strength
- review
- method: automated_source_review; reviewed at: 2026-09-30T21:44:09.612264+00:00; date: 2026-09-30; reviewer: Codex experimental-use-case curation; scope: Source-backed study/suite containment for navigation, not shared numerical comparison or execution.
- limitations
- Containment groups the original study only. Each protocol retains separate datasets, input assumptions, endpoints and values.