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Task

mRNABench PROT-LOC: Protein localisation

Protein localisation. Scored with AUPRC (%) on mRNABench Prot Loc. A linear probe over frozen embeddings, scored as the mean over ten random seeds.

21 evaluations · 21 results

Overview

Protein localisation. Scored with AUPRC (%) on mRNABench Prot Loc. A linear probe over frozen embeddings, scored as the mean over ten random seeds.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Results

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mRNABench PROT-LOC: Protein localisation

auprc (percent) · Higher values are better.

mRNABench PROT-LOC: Protein localisation · mRNABench Prot Loc (mRNABench split)

Evidence origin: Author-reported evaluation.

mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, column(Prot Loc)
  • Metrics alternate between AUPRC on a percentage scale and Pearson R, so figures in different columns are on different scales.
  • Each row is the best checkpoint of a model family, chosen by the authors, not the family's average.
Comparison details and limitations

Every method mRNABench reports on Protein localisation, scored with AUPRC (%) on mRNABench Prot Loc.

  • Author-reported numbers, source checked but not independently reproduced.

Automated source review: 2026-09-18. Numerical source review does not establish independent reproduction.

Dots show point estimates. Whiskers show only explicitly defined uncertainty (standard deviation, standard error or a labelled interval); their definitions remain in Table. Unresolved uncertainty is not plotted. Differences do not establish statistical significance.

Showing 12 of 21 matching rows.

Tested configuration
0255075100
Reported score
  1. Evo240.8
  2. Orthrus39.3
  3. AIDO.RNA38
  4. SpliceBERT36
  5. ERNIE-RNA33.8
  6. RiNALMo32.7
  7. DNABERT232.5
  8. RNA-FM32.2
  9. NT32
  10. UTR-LM32
  11. HyenaDNA31.8
  12. DNABERT-S31.1

Methods and evaluation design

Procedure, tasks and evaluated configurations

Evaluation design

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Benchmarks

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Recorded evaluations

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Run instructions

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Strengths, limitations and unresolved questions

Evidence

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Evidence table

Inspect claims, sources and review details

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statementOriginal source and locationReview and provenance
Relationship: part of
discovery-benchmark-mrnabench
Individual claims		mRNABench: A curated benchmark for mature mRNA property and function prediction

Original source ↗

Table 2, column(Prot Loc)

Version: preprint archived 2025-07-08
Retrieved: 2026-09-16T10:41:16.497221+00:00

source checked

automated source review · 2026-09-18

Audit details

Primary-source transcription with no human sign-off and no independent reproduction.

Field: links:part_of:discovery-benchmark-mrnabench

Claim: mrnabench-association-prot-loc

Source artifact SHA-256: 79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

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Sources and history

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Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: mrnabench-task-prot-loc

areas
rna-transcriptomes
tasks
Protein localisation
metric
AUPRC (%)
metric direction
higher
dataset
mRNABench Prot Loc
protocol
A linear probe over frozen embeddings, scored as the mean over ten random seeds.
source locator
Table 2, column(Prot Loc)
comparison panels
id: mrnabench-panel-prot-loc; title: mRNABench PROT-LOC: Protein localisation; protocol id: mrnabench-task-prot-loc; dataset id: mrnabench-dataset-mrnabench-prot-loc; metric: auprc; unit: percent; direction: higher; result ids: mrnabench-result-naive-baseline-prot-loc-auprc; mrnabench-result-naive-mamba-prot-loc-auprc; mrnabench-result-supervised-cnn-prot-loc-auprc; mrnabench-result-3utrbert-prot-loc-auprc; mrnabench-result-aido-rna-prot-loc-auprc; mrnabench-result-dnabert-s-prot-loc-auprc; mrnabench-result-dnabert2-prot-loc-auprc; mrnabench-result-ernie-rna-prot-loc-auprc; mrnabench-result-evo1-prot-loc-auprc; mrnabench-result-evo2-prot-loc-auprc; mrnabench-result-helix-mrna-prot-loc-auprc; mrnabench-result-hyenadna-prot-loc-auprc; mrnabench-result-nt-prot-loc-auprc; mrnabench-result-orthrus-prot-loc-auprc; mrnabench-result-rna-fm-prot-loc-auprc; mrnabench-result-rna-msm-prot-loc-auprc; mrnabench-result-rnabert-prot-loc-auprc; mrnabench-result-rnaernie-prot-loc-auprc; mrnabench-result-rinalmo-prot-loc-auprc; mrnabench-result-splicebert-prot-loc-auprc; mrnabench-result-utr-lm-prot-loc-auprc; source ids: expansion-p3-mrnabench-2025; source locator: Table 2, column(Prot Loc); context: Every method mRNABench reports on Protein localisation, scored with AUPRC (%) on mRNABench Prot Loc.; caveats: Author-reported numbers, source checked but not independently reproduced.; Metrics alternate between AUPRC on a percentage scale and Pearson R, so figures in different columns are on different scales.; Each row is the best checkpoint of a model family, chosen by the authors, not the family's average.; review: method: automated_source_review; date: 2026-09-18
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