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Task

mRNABench MRL-MPRA: Mean ribosome load on an MPRA library

Mean ribosome load on an MPRA library. Scored with R on mRNABench MRL MPRA. A linear probe over frozen embeddings, scored as the mean over ten random seeds.

21 evaluations · 21 results

Overview

Mean ribosome load on an MPRA library. Scored with R on mRNABench MRL MPRA. A linear probe over frozen embeddings, scored as the mean over ten random seeds.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Results

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mRNABench MRL-MPRA: Mean ribosome load on an MPRA library

pearson_r (correlation) · Higher values are better.

mRNABench MRL-MPRA: Mean ribosome load on an MPRA library · mRNABench MRL MPRA (mRNABench split)

Evidence origin: Author-reported evaluation.

mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, column(MRL MPRA)
  • Metrics alternate between AUPRC on a percentage scale and Pearson R, so figures in different columns are on different scales.
  • Each row is the best checkpoint of a model family, chosen by the authors, not the family's average.
Comparison details and limitations

Every method mRNABench reports on Mean ribosome load on an MPRA library, scored with R on mRNABench MRL MPRA.

  • Author-reported numbers, source checked but not independently reproduced.

Automated source review: 2026-09-18. Numerical source review does not establish independent reproduction.

Dots show point estimates. Whiskers show only explicitly defined uncertainty (standard deviation, standard error or a labelled interval); their definitions remain in Table. Unresolved uncertainty is not plotted. Differences do not establish statistical significance.

Showing 12 of 21 matching rows.

Tested configuration
-1-0.500.51
Reported score
  1. Supervised CNN0.77
  2. RiNALMo0.74
  3. Evo20.7
  4. AIDO.RNA0.65
  5. Naive Baseline0.64
  6. Orthrus0.63
  7. 3UTRBERT0.6
  8. NT0.6
  9. ERNIE-RNA0.58
  10. DNABERT20.57
  11. UTR-LM0.54
  12. SpliceBERT0.53

Methods and evaluation design

Procedure, tasks and evaluated configurations

Evaluation design

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Recorded evaluations

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Run instructions

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Strengths, limitations and unresolved questions

Evidence

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Evidence table

Inspect claims, sources and review details

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statementOriginal source and locationReview and provenance
Relationship: part of
discovery-benchmark-mrnabench
Individual claims		mRNABench: A curated benchmark for mature mRNA property and function prediction

Original source ↗

Table 2, column(MRL MPRA)

Version: preprint archived 2025-07-08
Retrieved: 2026-09-16T10:41:16.497221+00:00

source checked

automated source review · 2026-09-18

Audit details

Primary-source transcription with no human sign-off and no independent reproduction.

Field: links:part_of:discovery-benchmark-mrnabench

Claim: mrnabench-association-mrl-mpra

Source artifact SHA-256: 79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

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Sources and history

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Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: mrnabench-task-mrl-mpra

areas
rna-transcriptomes
tasks
Mean ribosome load on an MPRA library
metric
R
metric direction
higher
dataset
mRNABench MRL MPRA
protocol
A linear probe over frozen embeddings, scored as the mean over ten random seeds.
source locator
Table 2, column(MRL MPRA)
comparison panels
id: mrnabench-panel-mrl-mpra; title: mRNABench MRL-MPRA: Mean ribosome load on an MPRA library; protocol id: mrnabench-task-mrl-mpra; dataset id: mrnabench-dataset-mrnabench-mrl-mpra; metric: pearson_r; unit: correlation; direction: higher; result ids: mrnabench-result-naive-baseline-mrl-mpra-pearson-r; mrnabench-result-naive-mamba-mrl-mpra-pearson-r; mrnabench-result-supervised-cnn-mrl-mpra-pearson-r; mrnabench-result-3utrbert-mrl-mpra-pearson-r; mrnabench-result-aido-rna-mrl-mpra-pearson-r; mrnabench-result-dnabert-s-mrl-mpra-pearson-r; mrnabench-result-dnabert2-mrl-mpra-pearson-r; mrnabench-result-ernie-rna-mrl-mpra-pearson-r; mrnabench-result-evo1-mrl-mpra-pearson-r; mrnabench-result-evo2-mrl-mpra-pearson-r; mrnabench-result-helix-mrna-mrl-mpra-pearson-r; mrnabench-result-hyenadna-mrl-mpra-pearson-r; mrnabench-result-nt-mrl-mpra-pearson-r; mrnabench-result-orthrus-mrl-mpra-pearson-r; mrnabench-result-rna-fm-mrl-mpra-pearson-r; mrnabench-result-rna-msm-mrl-mpra-pearson-r; mrnabench-result-rnabert-mrl-mpra-pearson-r; mrnabench-result-rnaernie-mrl-mpra-pearson-r; mrnabench-result-rinalmo-mrl-mpra-pearson-r; mrnabench-result-splicebert-mrl-mpra-pearson-r; mrnabench-result-utr-lm-mrl-mpra-pearson-r; source ids: expansion-p3-mrnabench-2025; source locator: Table 2, column(MRL MPRA); context: Every method mRNABench reports on Mean ribosome load on an MPRA library, scored with R on mRNABench MRL MPRA.; caveats: Author-reported numbers, source checked but not independently reproduced.; Metrics alternate between AUPRC on a percentage scale and Pearson R, so figures in different columns are on different scales.; Each row is the best checkpoint of a model family, chosen by the authors, not the family's average.; review: method: automated_source_review; date: 2026-09-18
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