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Task

BEACON ncRNA: Non-coding RNA family classification

Non-coding RNA family classification. Multi-class Cls at sequence level, scored with ACC. Dataset Noorul's ncRNA set; train/validation/test 5,679/650/2,400.

17 evaluations · 17 results

Overview

Non-coding RNA family classification. Multi-class Cls at sequence level, scored with ACC. Dataset Noorul's ncRNA set; train/validation/test 5,679/650/2,400.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Results

Each comparison retains its reviewed evaluation scope, dataset and metric. Results are shown without a pooled ranking.

BEACON ncRNA: Non-coding RNA family classification

accuracy (percent) · Higher values are better.

BEACON ncRNA: Non-coding RNA family classification · Noorul's ncRNA set (BEACON split)

Evidence origin: Author-reported evaluation.

BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,column(ncRNA)
  • The Literature SOTA row is excluded: those numbers come from other papers under their own protocols.
  • Metrics differ between tasks, so these figures cannot be averaged into one RNA score.
Comparison details and limitations

Every method in BEACON Table 3 on Non-coding RNA family classification, scored with ACC on Noorul's ncRNA set with the split 5,679/650/2,400.

  • Author-reported numbers, source checked but not independently reproduced.

Automated source review: 2026-09-18. Numerical source review does not establish independent reproduction.

Dots show point estimates. Whiskers show only explicitly defined uncertainty (standard deviation, standard error or a labelled interval); their definitions remain in Table. Unresolved uncertainty is not plotted. Differences do not establish statistical significance.

Showing 12 of 17 matching rows.

Tested configuration
0255075100
Reported score
  1. RNA-FM96.81(0.061)
  2. Splice-MS102496.05(0.777)
  3. Splice-H51095.92(0.666)
  4. Splice-MS51095.87(0.364)
  5. BEACON-B51294.99(0.21)
  6. BEACON-B94.63(0.16)
  7. UTRBERT-4mer94.32(0.946)
  8. UTRBERT-6mer93.12(0.168)
  9. UTRBERT-5mer93.04(0.367)
  10. UTRBERT-3mer92.88(0.379)
  11. UTR-LM-MRL89.97(0.617)
  12. LSTM88.78(0.10)

Methods and evaluation design

Procedure, tasks and evaluated configurations

Evaluation design

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Benchmarks

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Recorded evaluations

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Run instructions

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Strengths, limitations and unresolved questions

Evidence

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Evidence table

Inspect claims, sources and review details

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statementOriginal source and locationReview and provenance
Relationship: part of
discovery-benchmark-beacon
Individual claims		BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2)

Original source ↗

Table1,p.6,row(ncRNA)

Version: v2, 12 December 2024
Retrieved: 2026-09-18

source checked

automated source review · 2026-09-18

Audit details

Primary-source transcription with no human sign-off and no independent reproduction.

Field: links:part_of:discovery-benchmark-beacon

Claim: beacon-association-ncrna

Source artifact SHA-256: 1370d75fe591bb8f994bc67f100a1a3fd557a62b9edb962b21f2fb038e9dea16

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

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Sources and history

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Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: beacon-task-ncrna

areas
rna-transcriptomes
tasks
Non-coding RNA family classification
metric
ACC
metric direction
higher
task type
Multi-class Cls
rna level
Sequence
dataset
Noorul's ncRNA set
splits
5,679/650/2,400
source locator
Table1,p.6,row(ncRNA)
comparison panels
id: beacon-panel-ncrna; title: BEACON ncRNA: Non-coding RNA family classification; protocol id: beacon-task-ncrna; dataset id: beacon-dataset-noorul-s-ncrna-set; metric: accuracy; unit: percent; direction: higher; result ids: beacon-result-cnn-ncrna-accuracy; beacon-result-resnet-ncrna-accuracy; beacon-result-lstm-ncrna-accuracy; beacon-result-rna-fm-ncrna-accuracy; beacon-result-rnabert-ncrna-accuracy; beacon-result-rna-msm-ncrna-accuracy; beacon-result-splice-h510-ncrna-accuracy; beacon-result-splice-ms510-ncrna-accuracy; beacon-result-splice-ms1024-ncrna-accuracy; beacon-result-utr-lm-mrl-ncrna-accuracy; beacon-result-utr-lm-te-and-el-ncrna-accuracy; beacon-result-utrbert-3mer-ncrna-accuracy; beacon-result-utrbert-4mer-ncrna-accuracy; beacon-result-utrbert-5mer-ncrna-accuracy; beacon-result-utrbert-6mer-ncrna-accuracy; beacon-result-beacon-b-ncrna-accuracy; beacon-result-beacon-b512-ncrna-accuracy; source ids: source-beacon-arxiv-2406-10391; source locator: Table3,p.8,column(ncRNA); context: Every method in BEACON Table 3 on Non-coding RNA family classification, scored with ACC on Noorul's ncRNA set with the split 5,679/650/2,400.; caveats: Author-reported numbers, source checked but not independently reproduced.; The Literature SOTA row is excluded: those numbers come from other papers under their own protocols.; Metrics differ between tasks, so these figures cannot be averaged into one RNA score.; review: method: automated_source_review; date: 2026-09-18
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