BEACON DMP: Distance map prediction
Distance map prediction. Reg at nucleotide level, scored with R2. Dataset RNAcontact; train/validation/test 188/23/80.
Overview
Distance map prediction. Reg at nucleotide level, scored with R2. Dataset RNAcontact; train/validation/test 188/23/80.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Results
Each comparison retains its reviewed evaluation scope, dataset and metric. Results are shown without a pooled ranking.
BEACON DMP: Distance map prediction
r2 (percent) · Higher values are better.
BEACON DMP: Distance map prediction · RNAcontact (BEACON split)
Evidence origin: Author-reported evaluation.
BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,column(DMP)- The Literature SOTA row is excluded: those numbers come from other papers under their own protocols.
- Metrics differ between tasks, so these figures cannot be averaged into one RNA score.
Comparison details and limitations
Every method in BEACON Table 3 on Distance map prediction, scored with R2 on RNAcontact with the split 188/23/80.
- Author-reported numbers, source checked but not independently reproduced.
Automated source review: 2026-09-18. Numerical source review does not establish independent reproduction.
Dots show point estimates. Whiskers show only explicitly defined uncertainty (standard deviation, standard error or a labelled interval); their definitions remain in Table. Unresolved uncertainty is not plotted. Differences do not establish statistical significance.
Showing 12 of 17 matching rows.
Methods and evaluation design
Procedure, tasks and evaluated configurations
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
- BEACON-B on BEACON DMP: Distance map prediction
- BEACON-B512 on BEACON DMP: Distance map prediction
- CNN on BEACON DMP: Distance map prediction
- LSTM on BEACON DMP: Distance map prediction
- ResNet on BEACON DMP: Distance map prediction
- RNA-FM on BEACON DMP: Distance map prediction
- RNA-MSM on BEACON DMP: Distance map prediction
- RNABERT on BEACON DMP: Distance map prediction
- Splice-H510 on BEACON DMP: Distance map prediction
- Splice-MS1024 on BEACON DMP: Distance map prediction
- Splice-MS510 on BEACON DMP: Distance map prediction
- UTR-LM-MRL on BEACON DMP: Distance map prediction
Run instructions
No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.
Strengths, limitations and unresolved questions
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-beacon Individual claims | BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Table1,p.6,row(DMP) Version: v2, 12 December 2024 | source checked automated source review · 2026-09-18 Audit detailsPrimary-source transcription with no human sign-off and no independent reproduction. Field: Claim: beacon-association-dmp Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
View linked audit checks and correction history
Release 2026-09-29-06401fd5b220 · Record review: source checked
1 source records and release history
- BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Original source · v2, 12 December 2024
Technical metadata and extraction receipts
Stable ID: beacon-task-dmp
- areas
- rna-transcriptomes
- tasks
- Distance map prediction
- metric
- R2
- metric direction
- higher
- task type
- Reg
- rna level
- Nucleotide
- dataset
- RNAcontact
- splits
- 188/23/80
- source locator
- Table1,p.6,row(DMP)
- comparison panels
- id: beacon-panel-dmp; title: BEACON DMP: Distance map prediction; protocol id: beacon-task-dmp; dataset id: beacon-dataset-rnacontact; metric: r2; unit: percent; direction: higher; result ids: beacon-result-cnn-dmp-r2; beacon-result-resnet-dmp-r2; beacon-result-lstm-dmp-r2; beacon-result-rna-fm-dmp-r2; beacon-result-rnabert-dmp-r2; beacon-result-rna-msm-dmp-r2; beacon-result-splice-h510-dmp-r2; beacon-result-splice-ms510-dmp-r2; beacon-result-splice-ms1024-dmp-r2; beacon-result-utr-lm-mrl-dmp-r2; beacon-result-utr-lm-te-and-el-dmp-r2; beacon-result-utrbert-3mer-dmp-r2; beacon-result-utrbert-4mer-dmp-r2; beacon-result-utrbert-5mer-dmp-r2; beacon-result-utrbert-6mer-dmp-r2; beacon-result-beacon-b-dmp-r2; beacon-result-beacon-b512-dmp-r2; source ids: source-beacon-arxiv-2406-10391; source locator: Table3,p.8,column(DMP); context: Every method in BEACON Table 3 on Distance map prediction, scored with R2 on RNAcontact with the split 188/23/80.; caveats: Author-reported numbers, source checked but not independently reproduced.; The Literature SOTA row is excluded: those numbers come from other papers under their own protocols.; Metrics differ between tasks, so these figures cannot be averaged into one RNA score.; review: method: automated_source_review; date: 2026-09-18
Related records
- part of: BEACON
- subject: BEACON DMP: part of discovery-benchmark-beacon
- benchmark: BEACON-B on BEACON DMP: Distance map prediction
- benchmark: BEACON-B512 on BEACON DMP: Distance map prediction
- benchmark: CNN on BEACON DMP: Distance map prediction
- benchmark: LSTM on BEACON DMP: Distance map prediction
- benchmark: ResNet on BEACON DMP: Distance map prediction
- benchmark: RNA-FM on BEACON DMP: Distance map prediction
- benchmark: RNA-MSM on BEACON DMP: Distance map prediction
- benchmark: RNABERT on BEACON DMP: Distance map prediction
- benchmark: Splice-H510 on BEACON DMP: Distance map prediction
- benchmark: Splice-MS1024 on BEACON DMP: Distance map prediction
- benchmark: Splice-MS510 on BEACON DMP: Distance map prediction
- benchmark: UTR-LM-MRL on BEACON DMP: Distance map prediction
- benchmark: UTR-LM-TE&EL on BEACON DMP: Distance map prediction
- benchmark: UTRBERT-3mer on BEACON DMP: Distance map prediction
- benchmark: UTRBERT-4mer on BEACON DMP: Distance map prediction
- benchmark: UTRBERT-5mer on BEACON DMP: Distance map prediction
- benchmark: UTRBERT-6mer on BEACON DMP: Distance map prediction