Source

Pir and Timucin 2025, Protein Science 34:e70030 (PMC article page)

PMC11751861 (Protein Sci 2025;34:e70030, published version of the 2024 bioRxiv preprint) · Peer-reviewed

DOI: 10.1002/pro.70030 Original source

What this source contributed

Records in this release that cite this source. A record can cite several sources.

1 method

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Methods (1)

AFFIPred

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

26 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statement	Original source and location	Review and provenance
attributes.artifact_sha256 b3ea9f1fbbfd16760ebff96c8829f401c5836ed861a0db53de3ef33aff44fca8 Source metadata	Pir and Timucin 2025, Protein Science 34:e70030 (PMC article page) Original source ↗ No field-specific location recorded Version: PMC11751861 (Protein Sci 2025;34:e70030, published version of the 2024 bioRxiv preprint) Retrieved: 2026-10-14T14:48:55Z	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_sha256` Source artifact SHA-256: `b3ea9f1fbbfd16760ebff96c8829f401c5836ed861a0db53de3ef33aff44fca8` Hash scope: artifact_sha256 is the SHA-256 of the retrieved page with the two per-request tokens blanked (the content of <meta name="ncbi_phid"> and the csrfmiddlewaretoken value), computed by data/omics/vep-use-cases-20261014/extract/pmc_html.py. The page is a mutable website: this hash describes the retrievals of 2026-10-14 (the collector's, and two by the reviewer, gave the same normalised hash); a later change to the page would change it. The raw bytes of the 2026-10-14 retrieval hashed to dba5d676083d17f6f92f09fe2466af0058a1a6f4538a540581cccfdcfac3577f.
Doi 10.1002/pro.70030 Source metadata	Pir and Timucin 2025, Protein Science 34:e70030 (PMC article page) Original source ↗ No field-specific location recorded Version: PMC11751861 (Protein Sci 2025;34:e70030, published version of the 2024 bioRxiv preprint) Retrieved: 2026-10-14T14:48:55Z	catalogued No individual claim review recorded Audit details Field: `attributes.doi` Source artifact SHA-256: `b3ea9f1fbbfd16760ebff96c8829f401c5836ed861a0db53de3ef33aff44fca8` Hash scope: artifact_sha256 is the SHA-256 of the retrieved page with the two per-request tokens blanked (the content of <meta name="ncbi_phid"> and the csrfmiddlewaretoken value), computed by data/omics/vep-use-cases-20261014/extract/pmc_html.py. The page is a mutable website: this hash describes the retrievals of 2026-10-14 (the collector's, and two by the reviewer, gave the same normalised hash); a later change to the page would change it. The raw bytes of the 2026-10-14 retrieval hashed to dba5d676083d17f6f92f09fe2466af0058a1a6f4538a540581cccfdcfac3577f.
Hash scope artifact_sha256 is the SHA-256 of the retrieved page with the two per-request tokens blanked (the content of <meta name="ncbi_phid"> and the csrfmiddlewaretoken value), computed by data/omics/vep-use-cases-20261014/extract/pmc_html.py. The page is a mutable website: this hash describes the retrievals of 2026-10-14 (the collector's, and two by the reviewer, gave the same normalised hash); a later change to the page would change it. The raw bytes of the 2026-10-14 retrieval hashed to dba5d676083d17f6f92f09fe2466af0058a1a6f4538a540581cccfdcfac3577f. Source metadata	Pir and Timucin 2025, Protein Science 34:e70030 (PMC article page) Original source ↗ No field-specific location recorded Version: PMC11751861 (Protein Sci 2025;34:e70030, published version of the 2024 bioRxiv preprint) Retrieved: 2026-10-14T14:48:55Z	catalogued No individual claim review recorded Audit details Field: `attributes.hash_scope` Source artifact SHA-256: `b3ea9f1fbbfd16760ebff96c8829f401c5836ed861a0db53de3ef33aff44fca8` Hash scope: artifact_sha256 is the SHA-256 of the retrieved page with the two per-request tokens blanked (the content of <meta name="ncbi_phid"> and the csrfmiddlewaretoken value), computed by data/omics/vep-use-cases-20261014/extract/pmc_html.py. The page is a mutable website: this hash describes the retrievals of 2026-10-14 (the collector's, and two by the reviewer, gave the same normalised hash); a later change to the page would change it. The raw bytes of the 2026-10-14 retrieval hashed to dba5d676083d17f6f92f09fe2466af0058a1a6f4538a540581cccfdcfac3577f.
Licence Not stated on the retrieved page Source metadata	Pir and Timucin 2025, Protein Science 34:e70030 (PMC article page) Original source ↗ No field-specific location recorded Version: PMC11751861 (Protein Sci 2025;34:e70030, published version of the 2024 bioRxiv preprint) Retrieved: 2026-10-14T14:48:55Z	catalogued No individual claim review recorded Audit details Field: `attributes.licence` Source artifact SHA-256: `b3ea9f1fbbfd16760ebff96c8829f401c5836ed861a0db53de3ef33aff44fca8` Hash scope: artifact_sha256 is the SHA-256 of the retrieved page with the two per-request tokens blanked (the content of <meta name="ncbi_phid"> and the csrfmiddlewaretoken value), computed by data/omics/vep-use-cases-20261014/extract/pmc_html.py. The page is a mutable website: this hash describes the retrievals of 2026-10-14 (the collector's, and two by the reviewer, gave the same normalised hash); a later change to the page would change it. The raw bytes of the 2026-10-14 retrieval hashed to dba5d676083d17f6f92f09fe2466af0058a1a6f4538a540581cccfdcfac3577f.
Media type text/html Source metadata	Pir and Timucin 2025, Protein Science 34:e70030 (PMC article page) Original source ↗ No field-specific location recorded Version: PMC11751861 (Protein Sci 2025;34:e70030, published version of the 2024 bioRxiv preprint) Retrieved: 2026-10-14T14:48:55Z	catalogued No individual claim review recorded Audit details Field: `attributes.media_type` Source artifact SHA-256: `b3ea9f1fbbfd16760ebff96c8829f401c5836ed861a0db53de3ef33aff44fca8` Hash scope: artifact_sha256 is the SHA-256 of the retrieved page with the two per-request tokens blanked (the content of <meta name="ncbi_phid"> and the csrfmiddlewaretoken value), computed by data/omics/vep-use-cases-20261014/extract/pmc_html.py. The page is a mutable website: this hash describes the retrievals of 2026-10-14 (the collector's, and two by the reviewer, gave the same normalised hash); a later change to the page would change it. The raw bytes of the 2026-10-14 retrieval hashed to dba5d676083d17f6f92f09fe2466af0058a1a6f4538a540581cccfdcfac3577f.
Publication status peer_reviewed Source metadata	Pir and Timucin 2025, Protein Science 34:e70030 (PMC article page) Original source ↗ No field-specific location recorded Version: PMC11751861 (Protein Sci 2025;34:e70030, published version of the 2024 bioRxiv preprint) Retrieved: 2026-10-14T14:48:55Z	catalogued No individual claim review recorded Audit details Field: `attributes.publication_status` Source artifact SHA-256: `b3ea9f1fbbfd16760ebff96c8829f401c5836ed861a0db53de3ef33aff44fca8` Hash scope: artifact_sha256 is the SHA-256 of the retrieved page with the two per-request tokens blanked (the content of <meta name="ncbi_phid"> and the csrfmiddlewaretoken value), computed by data/omics/vep-use-cases-20261014/extract/pmc_html.py. The page is a mutable website: this hash describes the retrievals of 2026-10-14 (the collector's, and two by the reviewer, gave the same normalised hash); a later change to the page would change it. The raw bytes of the 2026-10-14 retrieval hashed to dba5d676083d17f6f92f09fe2466af0058a1a6f4538a540581cccfdcfac3577f.
Retrieved at 2026-10-14T14:48:55Z Source metadata	Pir and Timucin 2025, Protein Science 34:e70030 (PMC article page) Original source ↗ No field-specific location recorded Version: PMC11751861 (Protein Sci 2025;34:e70030, published version of the 2024 bioRxiv preprint) Retrieved: 2026-10-14T14:48:55Z	catalogued No individual claim review recorded Audit details Field: `attributes.retrieved_at` Source artifact SHA-256: `b3ea9f1fbbfd16760ebff96c8829f401c5836ed861a0db53de3ef33aff44fca8` Hash scope: artifact_sha256 is the SHA-256 of the retrieved page with the two per-request tokens blanked (the content of <meta name="ncbi_phid"> and the csrfmiddlewaretoken value), computed by data/omics/vep-use-cases-20261014/extract/pmc_html.py. The page is a mutable website: this hash describes the retrievals of 2026-10-14 (the collector's, and two by the reviewer, gave the same normalised hash); a later change to the page would change it. The raw bytes of the 2026-10-14 retrieval hashed to dba5d676083d17f6f92f09fe2466af0058a1a6f4538a540581cccfdcfac3577f.
attributes.review.artifact_sha256 b3ea9f1fbbfd16760ebff96c8829f401c5836ed861a0db53de3ef33aff44fca8 Source metadata	Pir and Timucin 2025, Protein Science 34:e70030 (PMC article page) Original source ↗ No field-specific location recorded Version: PMC11751861 (Protein Sci 2025;34:e70030, published version of the 2024 bioRxiv preprint) Retrieved: 2026-10-14T14:48:55Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.artifact_sha256` Source artifact SHA-256: `b3ea9f1fbbfd16760ebff96c8829f401c5836ed861a0db53de3ef33aff44fca8` Hash scope: artifact_sha256 is the SHA-256 of the retrieved page with the two per-request tokens blanked (the content of <meta name="ncbi_phid"> and the csrfmiddlewaretoken value), computed by data/omics/vep-use-cases-20261014/extract/pmc_html.py. The page is a mutable website: this hash describes the retrievals of 2026-10-14 (the collector's, and two by the reviewer, gave the same normalised hash); a later change to the page would change it. The raw bytes of the 2026-10-14 retrieval hashed to dba5d676083d17f6f92f09fe2466af0058a1a6f4538a540581cccfdcfac3577f.
Review: method note Re-downloaded on 2026-10-14 and matched the pinned SHA-256 (PMC pages after blanking the ncbi_phid and csrfmiddlewaretoken values, checked by an independent normaliser). Source metadata	Pir and Timucin 2025, Protein Science 34:e70030 (PMC article page) Original source ↗ No field-specific location recorded Version: PMC11751861 (Protein Sci 2025;34:e70030, published version of the 2024 bioRxiv preprint) Retrieved: 2026-10-14T14:48:55Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.method_note` Source artifact SHA-256: `b3ea9f1fbbfd16760ebff96c8829f401c5836ed861a0db53de3ef33aff44fca8` Hash scope: artifact_sha256 is the SHA-256 of the retrieved page with the two per-request tokens blanked (the content of <meta name="ncbi_phid"> and the csrfmiddlewaretoken value), computed by data/omics/vep-use-cases-20261014/extract/pmc_html.py. The page is a mutable website: this hash describes the retrievals of 2026-10-14 (the collector's, and two by the reviewer, gave the same normalised hash); a later change to the page would change it. The raw bytes of the 2026-10-14 retrieval hashed to dba5d676083d17f6f92f09fe2466af0058a1a6f4538a540581cccfdcfac3577f.
Review method 1 values source-hash-verification Source metadata	Pir and Timucin 2025, Protein Science 34:e70030 (PMC article page) Original source ↗ No field-specific location recorded Version: PMC11751861 (Protein Sci 2025;34:e70030, published version of the 2024 bioRxiv preprint) Retrieved: 2026-10-14T14:48:55Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.method` Source artifact SHA-256: `b3ea9f1fbbfd16760ebff96c8829f401c5836ed861a0db53de3ef33aff44fca8` Hash scope: artifact_sha256 is the SHA-256 of the retrieved page with the two per-request tokens blanked (the content of <meta name="ncbi_phid"> and the csrfmiddlewaretoken value), computed by data/omics/vep-use-cases-20261014/extract/pmc_html.py. The page is a mutable website: this hash describes the retrievals of 2026-10-14 (the collector's, and two by the reviewer, gave the same normalised hash); a later change to the page would change it. The raw bytes of the 2026-10-14 retrieval hashed to dba5d676083d17f6f92f09fe2466af0058a1a6f4538a540581cccfdcfac3577f.

How to read the evidence

Sources and history

Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

Primary source for AFFIPred (rewire-benchmark-data #153).

Release history

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Technical metadata and extraction receipts

Stable ID: vep-uc-20261014-source-affipred

areas: dna-genomes; proteins-complexes
contexts: clinical_research
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11751861/
version: PMC11751861 (Protein Sci 2025;34:e70030, published version of the 2024 bioRxiv preprint)
retrieved at: 2026-10-14T14:48:55Z
artifact sha256: b3ea9f1fbbfd16760ebff96c8829f401c5836ed861a0db53de3ef33aff44fca8
publication status: peer_reviewed
licence: Not stated on the retrieved page
source locator: Abstract; availability statements
doi: 10.1002/pro.70030
media type: text/html
hash scope: artifact_sha256 is the SHA-256 of the retrieved page with the two per-request tokens blanked (the content of <meta name="ncbi_phid"> and the csrfmiddlewaretoken value), computed by data/omics/vep-use-cases-20261014/extract/pmc_html.py. The page is a mutable website: this hash describes the retrievals of 2026-10-14 (the collector's, and two by the reviewer, gave the same normalised hash); a later change to the page would change it. The raw bytes of the 2026-10-14 retrieval hashed to dba5d676083d17f6f92f09fe2466af0058a1a6f4538a540581cccfdcfac3577f.
review: reviewer: claude; reviewer note: Claude review agent; no human review claimed. Independent Claude (Opus 5.5) review agent, separate from the extraction agent that built this batch. Automated review only. Transcription, not reproduction.; reviewed at: 2026-10-14T16:00:00Z; artifact sha256: b3ea9f1fbbfd16760ebff96c8829f401c5836ed861a0db53de3ef33aff44fca8; retrieval url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11751861/; method: source-hash-verification; method note: Re-downloaded on 2026-10-14 and matched the pinned SHA-256 (PMC pages after blanking the ncbi_phid and csrfmiddlewaretoken values, checked by an independent normaliser).; note: Hash matches.

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