Source

A comparison of automatic cell identification methods for single-cell RNA sequencing data — Additional File 1 (Supplementary Data)

Supplementary Data PDF (Additional File 1) for Abdelaal et al. 2019 (Genome Biology), containing Figures S1–S13. A separate byte artifact from the already-catalogued main-text XML (ucc-research-source-abdelaal-2019-paper); contains Figure S10, the paper's genuine inter-dataset (cross-dataset, cross-species where applicable) brain annotation-transfer comparison; only the combinations involving MTG are cross-study.

Evidence

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Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

22 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-07-e11db1d1c586
Property and statement	Original source and location	Review and provenance
attributes.artifact_url https://static-content.springer.com/esm/art%3A10.1186%2Fs13059-019-1795-z/MediaObjects/13059_2019_1795_MOESM1_ESM.pdf Source metadata	A comparison of automatic cell identification methods for single-cell RNA sequencing data — Additional File 1 (Supplementary Data) Original source ↗ No field-specific location recorded Version: 10.1186/s13059-019-1795-z; Additional File 1 (Supplementary Data PDF) Retrieved: 2026-10-06T21:17:27Z	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_url` Source artifact SHA-256: `Not recorded` Hash scope: Page-level pdftoppm image render (2400 dpi for Figure S10 panels; up to 4800 dpi spot-checked on Figure S9 Panel A, which carries no printed digits and is not ingested here), read directly as an image. Not pdftotext (the heatmap values are not present in the PDF's text layer), not OCR, not color-to-value inference. Inspected artifact
attributes.extraction_method Page-level pdftoppm image render (2400 dpi for Figure S10 panels; up to 4800 dpi spot-checked on Figure S9 Panel A, which carries no printed digits and is not ingested here), read directly as an image. Not pdftotext (the heatmap values are not present in the PDF's text layer), not OCR, not color-to-value inference. Source metadata	A comparison of automatic cell identification methods for single-cell RNA sequencing data — Additional File 1 (Supplementary Data) Original source ↗ No field-specific location recorded Version: 10.1186/s13059-019-1795-z; Additional File 1 (Supplementary Data PDF) Retrieved: 2026-10-06T21:17:27Z	catalogued No individual claim review recorded Audit details Field: `attributes.extraction_method` Source artifact SHA-256: `Not recorded` Hash scope: Page-level pdftoppm image render (2400 dpi for Figure S10 panels; up to 4800 dpi spot-checked on Figure S9 Panel A, which carries no printed digits and is not ingested here), read directly as an image. Not pdftotext (the heatmap values are not present in the PDF's text layer), not OCR, not color-to-value inference. Inspected artifact
attributes.license CC BY 4.0, same article as ucc-research-source-abdelaal-2019-paper: "This article is distributed under the terms of the Creative Commons Attribution 4.0 International License" (c) The Author(s) 2019. Source metadata	A comparison of automatic cell identification methods for single-cell RNA sequencing data — Additional File 1 (Supplementary Data) Original source ↗ No field-specific location recorded Version: 10.1186/s13059-019-1795-z; Additional File 1 (Supplementary Data PDF) Retrieved: 2026-10-06T21:17:27Z	catalogued No individual claim review recorded Audit details Field: `attributes.license` Source artifact SHA-256: `Not recorded` Hash scope: Page-level pdftoppm image render (2400 dpi for Figure S10 panels; up to 4800 dpi spot-checked on Figure S9 Panel A, which carries no printed digits and is not ingested here), read directly as an image. Not pdftotext (the heatmap values are not present in the PDF's text layer), not OCR, not color-to-value inference. Inspected artifact
attributes.local_cache_path data/omics/use-case-coverage-20261007/research/artifacts/abdelaal-2019-pmc6734286-supplement1.pdf.gz (committed, gzip-compressed, tracked in version control; round-trip SHA-256 verified). Source metadata	A comparison of automatic cell identification methods for single-cell RNA sequencing data — Additional File 1 (Supplementary Data) Original source ↗ No field-specific location recorded Version: 10.1186/s13059-019-1795-z; Additional File 1 (Supplementary Data PDF) Retrieved: 2026-10-06T21:17:27Z	catalogued No individual claim review recorded Audit details Field: `attributes.local_cache_path` Source artifact SHA-256: `Not recorded` Hash scope: Page-level pdftoppm image render (2400 dpi for Figure S10 panels; up to 4800 dpi spot-checked on Figure S9 Panel A, which carries no printed digits and is not ingested here), read directly as an image. Not pdftotext (the heatmap values are not present in the PDF's text layer), not OCR, not color-to-value inference. Inspected artifact
attributes.retrieval_method HTTPS download; Springer/BMC static-content Additional-File-1 PDF mirror. Originally retrieved 2026-10-06T21:17:27Z; byte-identity re-verified directly in this pass (SHA-256 unchanged). Source metadata	A comparison of automatic cell identification methods for single-cell RNA sequencing data — Additional File 1 (Supplementary Data) Original source ↗ No field-specific location recorded Version: 10.1186/s13059-019-1795-z; Additional File 1 (Supplementary Data PDF) Retrieved: 2026-10-06T21:17:27Z	catalogued No individual claim review recorded Audit details Field: `attributes.retrieval_method` Source artifact SHA-256: `Not recorded` Hash scope: Page-level pdftoppm image render (2400 dpi for Figure S10 panels; up to 4800 dpi spot-checked on Figure S9 Panel A, which carries no printed digits and is not ingested here), read directly as an image. Not pdftotext (the heatmap values are not present in the PDF's text layer), not OCR, not color-to-value inference. Inspected artifact
attributes.retrieved_at 2026-10-06T21:17:27Z Source metadata	A comparison of automatic cell identification methods for single-cell RNA sequencing data — Additional File 1 (Supplementary Data) Original source ↗ No field-specific location recorded Version: 10.1186/s13059-019-1795-z; Additional File 1 (Supplementary Data PDF) Retrieved: 2026-10-06T21:17:27Z	catalogued No individual claim review recorded Audit details Field: `attributes.retrieved_at` Source artifact SHA-256: `Not recorded` Hash scope: Page-level pdftoppm image render (2400 dpi for Figure S10 panels; up to 4800 dpi spot-checked on Figure S9 Panel A, which carries no printed digits and is not ingested here), read directly as an image. Not pdftotext (the heatmap values are not present in the PDF's text layer), not OCR, not color-to-value inference. Inspected artifact
attributes.review_artifact data/omics/use-case-coverage-20261007/research/artifacts/abdelaal-2019-pmc6734286-supplement1.pdf.gz Source metadata	A comparison of automatic cell identification methods for single-cell RNA sequencing data — Additional File 1 (Supplementary Data) Original source ↗ No field-specific location recorded Version: 10.1186/s13059-019-1795-z; Additional File 1 (Supplementary Data PDF) Retrieved: 2026-10-06T21:17:27Z	catalogued No individual claim review recorded Audit details Field: `attributes.review_artifact` Source artifact SHA-256: `Not recorded` Hash scope: Page-level pdftoppm image render (2400 dpi for Figure S10 panels; up to 4800 dpi spot-checked on Figure S9 Panel A, which carries no printed digits and is not ingested here), read directly as an image. Not pdftotext (the heatmap values are not present in the PDF's text layer), not OCR, not color-to-value inference. Inspected artifact
attributes.review.actor Claude Sonnet cell-type-annotation-transfer evidence-research worker Source metadata	A comparison of automatic cell identification methods for single-cell RNA sequencing data — Additional File 1 (Supplementary Data) Original source ↗ No field-specific location recorded Version: 10.1186/s13059-019-1795-z; Additional File 1 (Supplementary Data PDF) Retrieved: 2026-10-06T21:17:27Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.actor` Source artifact SHA-256: `Not recorded` Hash scope: Page-level pdftoppm image render (2400 dpi for Figure S10 panels; up to 4800 dpi spot-checked on Figure S9 Panel A, which carries no printed digits and is not ingested here), read directly as an image. Not pdftotext (the heatmap values are not present in the PDF's text layer), not OCR, not color-to-value inference. Inspected artifact
attributes.review.method automated_source_review Source metadata	A comparison of automatic cell identification methods for single-cell RNA sequencing data — Additional File 1 (Supplementary Data) Original source ↗ No field-specific location recorded Version: 10.1186/s13059-019-1795-z; Additional File 1 (Supplementary Data PDF) Retrieved: 2026-10-06T21:17:27Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.method` Source artifact SHA-256: `Not recorded` Hash scope: Page-level pdftoppm image render (2400 dpi for Figure S10 panels; up to 4800 dpi spot-checked on Figure S9 Panel A, which carries no printed digits and is not ingested here), read directly as an image. Not pdftotext (the heatmap values are not present in the PDF's text layer), not OCR, not color-to-value inference. Inspected artifact
attributes.review.note Source-backed transcription of Abdelaal et al. 2019 Additional File 1 (Supplementary Data PDF), a separate byte artifact from the already-catalogued main-text XML. Originally retrieved 2026-10-06T21:17:27Z via the Springer/BMC static-content route (https://static-content.springer.com/esm/art%3A10.1186%2Fs13059-019-1795-z/MediaObjects/13059_2019_1795_MOESM1_ESM.pdf), HTTP 200, 13,495,279 bytes. Re-verified byte-identical (SHA-256 unchanged) in this pass against the cached copy in the neighboring cell-type-evidence-20261006 worktree before archiving. Figure S10 (page 15 of 18) read directly from a pdftoppm image render at 2400 dpi (not OCR, not color inference); Panel B's printed numeric cell values independently re-confirmed against the original PDF by a separate reviewer prior to this ingestion. No new model execution, independent experimental replication, or qualified human scientific review. Source metadata	A comparison of automatic cell identification methods for single-cell RNA sequencing data — Additional File 1 (Supplementary Data) Original source ↗ No field-specific location recorded Version: 10.1186/s13059-019-1795-z; Additional File 1 (Supplementary Data PDF) Retrieved: 2026-10-06T21:17:27Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.note` Source artifact SHA-256: `Not recorded` Hash scope: Page-level pdftoppm image render (2400 dpi for Figure S10 panels; up to 4800 dpi spot-checked on Figure S9 Panel A, which carries no printed digits and is not ingested here), read directly as an image. Not pdftotext (the heatmap values are not present in the PDF's text layer), not OCR, not color-to-value inference. Inspected artifact

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Release 2026-10-07-e11db1d1c586 · Record review: source checked

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Technical metadata and extraction receipts

Stable ID: ucc-research-source-abdelaal-2019-supplement

url: https://static-content.springer.com/esm/art%3A10.1186%2Fs13059-019-1795-z/MediaObjects/13059_2019_1795_MOESM1_ESM.pdf
version: 10.1186/s13059-019-1795-z; Additional File 1 (Supplementary Data PDF)
retrieved at: 2026-10-06T21:17:27Z
sha256: 797a2b22f584135f4ff6f7c98203d8e9529d6600f675b500205607b47b212a81
artifact url: https://static-content.springer.com/esm/art%3A10.1186%2Fs13059-019-1795-z/MediaObjects/13059_2019_1795_MOESM1_ESM.pdf
source locator: Figure S10 (page 15 of 18), Panel B ("deeper level of annotation with 34 cell populations"), row "SVMrejection"
license: CC BY 4.0, same article as ucc-research-source-abdelaal-2019-paper: "This article is distributed under the terms of the Creative Commons Attribution 4.0 International License" (c) The Author(s) 2019.
review: method: automated_source_review; actor: Claude Sonnet cell-type-annotation-transfer evidence-research worker; reviewed at: 2026-10-07T07:44:08Z; note: Source-backed transcription of Abdelaal et al. 2019 Additional File 1 (Supplementary Data PDF), a separate byte artifact from the already-catalogued main-text XML. Originally retrieved 2026-10-06T21:17:27Z via the Springer/BMC static-content route (https://static-content.springer.com/esm/art%3A10.1186%2Fs13059-019-1795-z/MediaObjects/13059_2019_1795_MOESM1_ESM.pdf), HTTP 200, 13,495,279 bytes. Re-verified byte-identical (SHA-256 unchanged) in this pass against the cached copy in the neighboring cell-type-evidence-20261006 worktree before archiving. Figure S10 (page 15 of 18) read directly from a pdftoppm image render at 2400 dpi (not OCR, not color inference); Panel B's printed numeric cell values independently re-confirmed against the original PDF by a separate reviewer prior to this ingestion. No new model execution, independent experimental replication, or qualified human scientific review.
retrieval method: HTTPS download; Springer/BMC static-content Additional-File-1 PDF mirror. Originally retrieved 2026-10-06T21:17:27Z; byte-identity re-verified directly in this pass (SHA-256 unchanged).
local cache path: data/omics/use-case-coverage-20261007/research/artifacts/abdelaal-2019-pmc6734286-supplement1.pdf.gz (committed, gzip-compressed, tracked in version control; round-trip SHA-256 verified).
review artifact: data/omics/use-case-coverage-20261007/research/artifacts/abdelaal-2019-pmc6734286-supplement1.pdf.gz
extraction method: Page-level pdftoppm image render (2400 dpi for Figure S10 panels; up to 4800 dpi spot-checked on Figure S9 Panel A, which carries no printed digits and is not ingested here), read directly as an image. Not pdftotext (the heatmap values are not present in the PDF's text layer), not OCR, not color-to-value inference.

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