Supplementary Table 1: training RNA-seq samples and junctions per species (Jaganathan et al., bioRxiv 2026)
bioRxiv version 1 supplement DC1 (757673_file02.tsv) · Preprint
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- SpliceAI2 training data: Training data Trained on splice site and junction usage from 314,745 short-read RNA-seq samples (67,493,026 junctions) in human and nine other mammalian species, and on transcript usage from 330 ENCODE long-read samples in human and mouse. Human: 127,431 samples from recount3 (GTEx, TCGA, CCLE and other SRA-derived projects). (Main 'Hierarchical model of RNA splicing' paragraph 1; Methods 'Training datasets'; Supplementary Table 1 rows 'Homo_sapiens' and 'Total')
- SpliceAI2 training split and benchmark overlap: Training split Genes on human chromosomes 21 and 22 were held out for validation and all other genes were used for training. The variant benchmarks (GTEx and GEL GT/AG, GTEx sQTL, OpenSplice, UK Biobank) are not restricted to held-out chromosomes, so most benchmark variants lie in genes seen in training; only the top-transcript benchmark is restricted to chromosomes 21 and 22. The paper does not say whether junctions observed in GTEx benchmark samples were excluded from training. (Methods 'SpliceAI2 model' (Training, last paragraph), 'Top transcript benchmark' and 'Variant effect benchmarks'; Supplementary Table 1 row 'Homo_sapiens')
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17 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.artifact_sha256 f46bf8c10880cc2359b6070c1e85af8e5ae7768f75e2580970f6078b54415be7 Source metadata | Supplementary Table 1: training RNA-seq samples and junctions per species (Jaganathan et al., bioRxiv 2026) No field-specific location recorded Version: bioRxiv version 1 supplement DC1 (757673_file02.tsv) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Doi 10.64898/2026.10.08.757673 Source metadata | Supplementary Table 1: training RNA-seq samples and junctions per species (Jaganathan et al., bioRxiv 2026) No field-specific location recorded Version: bioRxiv version 1 supplement DC1 (757673_file02.tsv) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Licence CC-BY-NC-4.0 Source metadata | Supplementary Table 1: training RNA-seq samples and junctions per species (Jaganathan et al., bioRxiv 2026) No field-specific location recorded Version: bioRxiv version 1 supplement DC1 (757673_file02.tsv) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Media type text/tab-separated-values Source metadata | Supplementary Table 1: training RNA-seq samples and junctions per species (Jaganathan et al., bioRxiv 2026) No field-specific location recorded Version: bioRxiv version 1 supplement DC1 (757673_file02.tsv) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Publication status preprint Source metadata | Supplementary Table 1: training RNA-seq samples and junctions per species (Jaganathan et al., bioRxiv 2026) No field-specific location recorded Version: bioRxiv version 1 supplement DC1 (757673_file02.tsv) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Retrieved at 2026-10-13T12:40:34Z Source metadata | Supplementary Table 1: training RNA-seq samples and junctions per species (Jaganathan et al., bioRxiv 2026) No field-specific location recorded Version: bioRxiv version 1 supplement DC1 (757673_file02.tsv) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location All 11 data rows (10 species and the Total row) Source metadata | Supplementary Table 1: training RNA-seq samples and junctions per species (Jaganathan et al., bioRxiv 2026) No field-specific location recorded Version: bioRxiv version 1 supplement DC1 (757673_file02.tsv) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Url https://www.biorxiv.org/content/biorxiv/early/2026/10/11/2026.10.08.757673/DC1/embed/media-1.tsv?download=true Source metadata | Supplementary Table 1: training RNA-seq samples and junctions per species (Jaganathan et al., bioRxiv 2026) No field-specific location recorded Version: bioRxiv version 1 supplement DC1 (757673_file02.tsv) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Version bioRxiv version 1 supplement DC1 (757673_file02.tsv) Source metadata | Supplementary Table 1: training RNA-seq samples and junctions per species (Jaganathan et al., bioRxiv 2026) No field-specific location recorded Version: bioRxiv version 1 supplement DC1 (757673_file02.tsv) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description Primary source retrieved and hashed for the 2026-10-13 SpliceAI2 extraction (issue #127). Source metadata | Supplementary Table 1: training RNA-seq samples and junctions per species (Jaganathan et al., bioRxiv 2026) No field-specific location recorded Version: bioRxiv version 1 supplement DC1 (757673_file02.tsv) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
Primary source retrieved and hashed for the 2026-10-13 SpliceAI2 extraction (issue #127).
Technical metadata and extraction receipts
Stable ID: rna-splicing-20261013-spliceai2-source-supplementary-table-1
- areas
- dna-genomes; rna-transcriptomes
- contexts
- research
- url
- https://www.biorxiv.org/content/biorxiv/early/2026/10/11/2026.10.08.757673/DC1/embed/media-1.tsv?download=true
- version
- bioRxiv version 1 supplement DC1 (757673_file02.tsv)
- retrieved at
- 2026-10-13T12:40:34Z
- artifact sha256
- f46bf8c10880cc2359b6070c1e85af8e5ae7768f75e2580970f6078b54415be7
- doi
- 10.64898/2026.10.08.757673
- publication status
- preprint
- licence
- CC-BY-NC-4.0
- media type
- text/tab-separated-values
- source locator
- All 11 data rows (10 species and the Total row)