MFASS matched canonical annotation v1: report.json

What this source contributed

Records in this release that cite this source. A record can cite several sources.

• 4 configurations
• 1 protocol
• 1 dataset subset
• 2 baselines
• 4 evaluations
• 16 results
• 11 evidence claims
• 1 use case

Results

Values as the source printed them. Compare results only under compatible protocols, datasets and metrics.

Claims

Statements this source supports, each with where in the source it was checked.

• Pangolin 1.0.2 + per-gene masking patch · mask False (P0): facets.method_types: Facets: method types ["supervised_machine_learning"] (SpliceAI and Pangolin (configuration_of links))
• Pangolin 1.0.2 + per-gene masking patch · mask True (P1): facets.method_types: Facets: method types ["supervised_machine_learning"] (SpliceAI and Pangolin (configuration_of links))
• Relevance of MFASS: matched GENCODE 44 canonical annotation to "Prioritise variants for splicing experiments": Assessed by MFASS: matched GENCODE 44 canonical annotation (rewire-mfass-matched-v1-source-report: /conditions/{S0,S1,P0,P1}/coverage; /conditions/{S0,S1,P0,P1}/metrics; /conditions/{S0,S1,P0,P1}/ties; /contrasts/{S1-S0,P1-P0,P0-S0}/paired/precision_at_capacity; rewire-mfass-matched-v1-source-manifest-v1: /conditions; /distance; /resources_sha256; /code; rewire-mfass-matched-v1-source-exclusion-verification: /exclusion_counts; /conditions; /checks; use-case-source-mfass-matched-intake-194a78b: Opening coverage, exclusion, annotation and interpretation paragraphs; Review and validation; evidence-expansion-mfass-readme-62a93814: Dataset; Limits)
• SpliceAI 1.3.1 · mask 0 (S0): facets.method_types: Facets: method types ["supervised_machine_learning"] (SpliceAI and Pangolin (configuration_of links))
• SpliceAI 1.3.1 · mask 1 (S1): facets.method_types: Facets: method types ["supervised_machine_learning"] (SpliceAI and Pangolin (configuration_of links))
• This exact P0 configuration evaluates pangolin with the documented code, weights, annotation and masking settings.: Configuration of Pangolin (manifest-v1.json: study and conditions)
• This exact P1 configuration evaluates pangolin with the documented code, weights, annotation and masking settings.: Configuration of Pangolin (manifest-v1.json: study and conditions)
• This exact S0 configuration evaluates spliceai with the documented code, weights, annotation and masking settings.: Configuration of SpliceAI (manifest-v1.json: study and conditions)
• This exact S1 configuration evaluates spliceai with the documented code, weights, annotation and masking settings.: Configuration of SpliceAI (manifest-v1.json: study and conditions)
• This matched-annotation protocol directly evaluates the MFASS splice-variant prioritisation task on its documented filtered test subset.: Evaluates task MFASS splice-variant prioritisation (manifest-v1.json: study and conditions)
• This matched-annotation protocol evaluates MFASS splice-variant prioritisation.: Part of MFASS v2 (manifest-v1.json: study and conditions)

Models, benchmarks and other records

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.