ProteinGym v1.3 AMFR substitution assay: reproduction instructions
ca73fa47136d182f2d4ddb083d084712198fc0e2
What this source contributed
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Results
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Claims
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- Relevance of ProteinGym v1.3 AMFR substitution assay to "Assess methods for protein stability experiments": Assessed by ProteinGym v1.3 AMFR substitution assay (rewire-local-20260920-source-proteingym-esm2: /metrics; /coverage; /execution/adapter_provenance; /execution; /input_information; /provenance; /protocol_results; rewire-local-20260920-instructions-proteingym: Data and method; Reproduce; profile-protocol-proteingym-reference-files-dms-substitutions-csv-a8f49801: AMFR_HUMAN_Tsuboyama_2023_4G3O row: seq_len, selection_assay, raw_DMS_phenotype_name and mutant-count columns; use-case-source-amfr-pilot-plan-194a78b: Question; Task and data; Methods; Gates and execution order; Runtime and cost)
Models, benchmarks and other records
Protocols (1)
Evaluations (1)
Evidence
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Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
13 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Artifact SHA-256 5acb7b2769aae657d48d23c282319e7c69b8ed0424b3c02c875637df7f8dd9fb Source metadata | ProteinGym v1.3 AMFR substitution assay: reproduction instructions No field-specific location recorded Version: ca73fa47136d182f2d4ddb083d084712198fc0e2 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Artifact url https://raw.githubusercontent.com/rewire-bio/rewire-benchmarks/ca73fa47136d182f2d4ddb083d084712198fc0e2/research/local-runs-2026-09-20/proteingym-esm2/README.md Source metadata | ProteinGym v1.3 AMFR substitution assay: reproduction instructions No field-specific location recorded Version: ca73fa47136d182f2d4ddb083d084712198fc0e2 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Retrieved at 2026-09-20T20:54:03Z Source metadata | ProteinGym v1.3 AMFR substitution assay: reproduction instructions No field-specific location recorded Version: ca73fa47136d182f2d4ddb083d084712198fc0e2 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source type reproduction_instructions Source metadata | ProteinGym v1.3 AMFR substitution assay: reproduction instructions No field-specific location recorded Version: ca73fa47136d182f2d4ddb083d084712198fc0e2 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Url https://github.com/rewire-bio/rewire-benchmarks/blob/ca73fa47136d182f2d4ddb083d084712198fc0e2/research/local-runs-2026-09-20/proteingym-esm2/README.md Source metadata | ProteinGym v1.3 AMFR substitution assay: reproduction instructions No field-specific location recorded Version: ca73fa47136d182f2d4ddb083d084712198fc0e2 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Version ca73fa47136d182f2d4ddb083d084712198fc0e2 Source metadata | ProteinGym v1.3 AMFR substitution assay: reproduction instructions No field-specific location recorded Version: ca73fa47136d182f2d4ddb083d084712198fc0e2 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description Pinned instructions accompanying the local execution evidence. Paths in the website snippet are illustrative; execution verification is recorded separately. Source metadata | ProteinGym v1.3 AMFR substitution assay: reproduction instructions No field-specific location recorded Version: ca73fa47136d182f2d4ddb083d084712198fc0e2 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Facets: areas1 values
| ProteinGym v1.3 AMFR substitution assay: reproduction instructions No field-specific location recorded Version: ca73fa47136d182f2d4ddb083d084712198fc0e2 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Record ID rewire-local-20260920-instructions-proteingym Source metadata | ProteinGym v1.3 AMFR substitution assay: reproduction instructions No field-specific location recorded Version: ca73fa47136d182f2d4ddb083d084712198fc0e2 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Record type source Source metadata | ProteinGym v1.3 AMFR substitution assay: reproduction instructions No field-specific location recorded Version: ca73fa47136d182f2d4ddb083d084712198fc0e2 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
Pinned instructions accompanying the local execution evidence. Paths in the website snippet are illustrative; execution verification is recorded separately.
Technical metadata and extraction receipts
Stable ID: rewire-local-20260920-instructions-proteingym
- areas
- proteins-complexes
- url
- https://github.com/rewire-bio/rewire-benchmarks/blob/ca73fa47136d182f2d4ddb083d084712198fc0e2/research/local-runs-2026-09-20/proteingym-esm2/README.md
- artifact url
- https://raw.githubusercontent.com/rewire-bio/rewire-benchmarks/ca73fa47136d182f2d4ddb083d084712198fc0e2/research/local-runs-2026-09-20/proteingym-esm2/README.md
- artifact sha256
- 5acb7b2769aae657d48d23c282319e7c69b8ed0424b3c02c875637df7f8dd9fb
- version
- ca73fa47136d182f2d4ddb083d084712198fc0e2
- retrieved at
- 2026-09-20T20:54:03Z
- source type
- reproduction_instructions