LIST-S2: taxonomy based sorting of deleterious missense mutations across species
Europe PMC full-text XML for PMC7319545, Nucleic Acids Research 2020 · Peer-reviewed
What this source contributed
Records in this release that cite this source. A record can cite several sources.
Claims
Statements this source supports, each with where in the source it was checked.
- LIST-S2: description: Description Quantifies the conservation of a position from local sequence identity and taxonomic distances in a multiple alignment, for sequences from any organism rather than human alone. (qa-descriptions-20261011-e-source-list-s2: Abstract)
Models, benchmarks and other records
Methods (1)
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
25 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.artifact_sha256 5867606de985e78a008b910e4a49c91e6f9ef4e3f37dc5bad92f98d7bf935d76 Source metadata | LIST-S2: taxonomy based sorting of deleterious missense mutations across species No field-specific location recorded Version: Europe PMC full-text XML for PMC7319545, Nucleic Acids Research 2020 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. |
| Artifact url https://www.ebi.ac.uk/europepmc/webservices/rest/PMC7319545/fullTextXML Source metadata | LIST-S2: taxonomy based sorting of deleterious missense mutations across species No field-specific location recorded Version: Europe PMC full-text XML for PMC7319545, Nucleic Acids Research 2020 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. |
| Hash scope SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Source metadata | LIST-S2: taxonomy based sorting of deleterious missense mutations across species No field-specific location recorded Version: Europe PMC full-text XML for PMC7319545, Nucleic Acids Research 2020 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. |
| Licence CC-BY-NC-4.0 Source metadata | LIST-S2: taxonomy based sorting of deleterious missense mutations across species No field-specific location recorded Version: Europe PMC full-text XML for PMC7319545, Nucleic Acids Research 2020 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. |
| Media type application/xml Source metadata | LIST-S2: taxonomy based sorting of deleterious missense mutations across species No field-specific location recorded Version: Europe PMC full-text XML for PMC7319545, Nucleic Acids Research 2020 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. |
| Publication status peer_reviewed Source metadata | LIST-S2: taxonomy based sorting of deleterious missense mutations across species No field-specific location recorded Version: Europe PMC full-text XML for PMC7319545, Nucleic Acids Research 2020 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. |
| Retrieved at 2026-10-11T01:38:38Z Source metadata | LIST-S2: taxonomy based sorting of deleterious missense mutations across species No field-specific location recorded Version: Europe PMC full-text XML for PMC7319545, Nucleic Acids Research 2020 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. |
| Review: date 2026-10-11 Source metadata | LIST-S2: taxonomy based sorting of deleterious missense mutations across species No field-specific location recorded Version: Europe PMC full-text XML for PMC7319545, Nucleic Acids Research 2020 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. |
| Review: method note Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record. Source metadata | LIST-S2: taxonomy based sorting of deleterious missense mutations across species No field-specific location recorded Version: Europe PMC full-text XML for PMC7319545, Nucleic Acids Research 2020 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. |
Review method2 values
| LIST-S2: taxonomy based sorting of deleterious missense mutations across species No field-specific location recorded Version: Europe PMC full-text XML for PMC7319545, Nucleic Acids Research 2020 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. |
Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
Source text retrieved and hashed for the issue #88 category-only description fix.
Technical metadata and extraction receipts
Stable ID: qa-descriptions-20261011-e-source-list-s2
- url
- https://doi.org/10.1093/nar/gkaa288
- artifact url
- https://www.ebi.ac.uk/europepmc/webservices/rest/PMC7319545/fullTextXML
- version
- Europe PMC full-text XML for PMC7319545, Nucleic Acids Research 2020
- retrieved at
- 2026-10-11T01:38:38Z
- artifact sha256
- 5867606de985e78a008b910e4a49c91e6f9ef4e3f37dc5bad92f98d7bf935d76
- publication status
- peer_reviewed
- media type
- application/xml
- source locator
- Abstract
- hash scope
- SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence.
- licence
- CC-BY-NC-4.0
- review
- method: automated-source-review; ai-assisted-source-review; reviewer: claude; reviewer note: Extractor: Claude integrator agent for issue #88. Reviewer: a separate Claude review agent, independent of the extractor; no human review claimed.; date: 2026-10-11; method note: Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record.; note: Approved with two corrections, both applied: the MutFormer source licence is CC BY 4.0 per the arXiv abstract page, and the MetaRNN source locator now names the Background passage. Checked the 27 Chen 2020 descriptions row by row against Table 1 (PMC7033911) and spot-checked AlphaMissense, MisFit, popEVE, VARITY, MetaRNN, MutFormer and gMVP against their abstracts; accurate. Licences on the other new sources match Europe PMC.; receipt: data/omics/qa-descriptions-20261011-e/review.json; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC7319545/fullTextXML