Abstract: ACTINN: automated identification of cell types in single cell RNA sequencing
Europe PMC core record MED/31359028 (title and abstract), Bioinformatics 2020 · Peer-reviewed
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Claims
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- ACTINN: description: Description Cell-type classifier for single-cell RNA-seq that trains a neural network with three hidden layers on datasets with predefined cell types and predicts cell types in other datasets. (qa-descriptions-20261011-b-source-actinn: abstractText; coverage-source-scfoundation-supp: Supplementary Table 4 (cell type annotation on Zheng68K and Segerstolpe))
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Pipelines (1)
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
26 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.artifact_sha256 7fb2d86fa8f08860d57911adb52e8844220d915a891f1144e03310aabab4dc6d Source metadata | Abstract: ACTINN: automated identification of cell types in single cell RNA sequencing No field-specific location recorded Version: Europe PMC core record MED/31359028 (title and abstract), Bioinformatics 2020 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. |
| Artifact url https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=DOI%3A%2210.1093/bioinformatics/btz592%22&format=json&resultType=core Source metadata | Abstract: ACTINN: automated identification of cell types in single cell RNA sequencing No field-specific location recorded Version: Europe PMC core record MED/31359028 (title and abstract), Bioinformatics 2020 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. |
| Hash scope SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. Source metadata | Abstract: ACTINN: automated identification of cell types in single cell RNA sequencing No field-specific location recorded Version: Europe PMC core record MED/31359028 (title and abstract), Bioinformatics 2020 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. |
| Media type application/json Source metadata | Abstract: ACTINN: automated identification of cell types in single cell RNA sequencing No field-specific location recorded Version: Europe PMC core record MED/31359028 (title and abstract), Bioinformatics 2020 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. |
| Missing metadata: licence: note The retrieved record or document gives no licence Source metadata | Abstract: ACTINN: automated identification of cell types in single cell RNA sequencing No field-specific location recorded Version: Europe PMC core record MED/31359028 (title and abstract), Bioinformatics 2020 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. |
| Missing metadata: licence: reason unreported Source metadata | Abstract: ACTINN: automated identification of cell types in single cell RNA sequencing No field-specific location recorded Version: Europe PMC core record MED/31359028 (title and abstract), Bioinformatics 2020 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. |
| Publication status peer_reviewed Source metadata | Abstract: ACTINN: automated identification of cell types in single cell RNA sequencing No field-specific location recorded Version: Europe PMC core record MED/31359028 (title and abstract), Bioinformatics 2020 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. |
| Retrieved at 2026-10-11T00:58:59Z Source metadata | Abstract: ACTINN: automated identification of cell types in single cell RNA sequencing No field-specific location recorded Version: Europe PMC core record MED/31359028 (title and abstract), Bioinformatics 2020 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. |
| Review: date 2026-10-11 Source metadata | Abstract: ACTINN: automated identification of cell types in single cell RNA sequencing No field-specific location recorded Version: Europe PMC core record MED/31359028 (title and abstract), Bioinformatics 2020 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. |
| Review: method note Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record. Source metadata | Abstract: ACTINN: automated identification of cell types in single cell RNA sequencing No field-specific location recorded Version: Europe PMC core record MED/31359028 (title and abstract), Bioinformatics 2020 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. |
Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
Source text retrieved and hashed for the issue #88 placeholder-description fix.
Technical metadata and extraction receipts
Stable ID: qa-descriptions-20261011-b-source-actinn
- url
- https://doi.org/10.1093/bioinformatics/btz592
- artifact url
- https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=DOI%3A%2210.1093/bioinformatics/btz592%22&format=json&resultType=core
- version
- Europe PMC core record MED/31359028 (title and abstract), Bioinformatics 2020
- retrieved at
- 2026-10-11T00:58:59Z
- artifact sha256
- 7fb2d86fa8f08860d57911adb52e8844220d915a891f1144e03310aabab4dc6d
- publication status
- peer_reviewed
- media type
- application/json
- source locator
- abstractText
- hash scope
- SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence.
- missing metadata
- licence: reason: unreported; note: The retrieved record or document gives no licence
- review
- method: automated-source-review; ai-assisted-source-review; reviewer: claude; reviewer note: Extractor: Claude integrator agent for issue #88. Reviewer: a separate Claude review agent, independent of the extractor; no human review claimed.; date: 2026-10-11; method note: Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record.; note: Approved. Checked the new sources' licences against the arXiv abstract pages and Europe PMC, the 7 scFoundation pipeline descriptions against their abstracts, the language-model descriptions against their model cards and reports, and the TAPE architecture figures against the TAPE paper; all correct. The catalogue entries reuse reviewed profile summaries.; receipt: data/omics/qa-descriptions-20261011-b/review.json; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=DOI%3A%2210.1093/bioinformatics/btz592%22&format=json&resultType=core