ACTINN: description
Description of ACTINN
Cell-type classifier for single-cell RNA-seq that trains a neural network with three hidden layers on datasets with predefined cell types and predicts cell types in other datasets.
Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
14 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Claimed field description Context-only references | scFoundation primary supplement, Table4 qa-descriptions-20261011-b-source-actinn: abstractText; coverage-source-scfoundation-supp: Supplementary Table 4 (cell type annotation on Zheng68K and Segerstolpe) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 10.1038/s41592-024-02305-7 publisher supplement | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed field description Context-only references | Abstract: ACTINN: automated identification of cell types in single cell RNA sequencing qa-descriptions-20261011-b-source-actinn: abstractText; coverage-source-scfoundation-supp: Supplementary Table 4 (cell type annotation on Zheng68K and Segerstolpe) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Europe PMC core record MED/31359028 (title and abstract), Bioinformatics 2020 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. |
| Previous value ACTINN cell-type annotation pipeline reported in the primary table; fitting/configuration details unextracted. Context-only references | scFoundation primary supplement, Table4 qa-descriptions-20261011-b-source-actinn: abstractText; coverage-source-scfoundation-supp: Supplementary Table 4 (cell type annotation on Zheng68K and Segerstolpe) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 10.1038/s41592-024-02305-7 publisher supplement | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Previous value ACTINN cell-type annotation pipeline reported in the primary table; fitting/configuration details unextracted. Context-only references | Abstract: ACTINN: automated identification of cell types in single cell RNA sequencing qa-descriptions-20261011-b-source-actinn: abstractText; coverage-source-scfoundation-supp: Supplementary Table 4 (cell type annotation on Zheng68K and Segerstolpe) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Europe PMC core record MED/31359028 (title and abstract), Bioinformatics 2020 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. |
| Source location qa-descriptions-20261011-b-source-actinn: abstractText; coverage-source-scfoundation-supp: Supplementary Table 4 (cell type annotation on Zheng68K and Segerstolpe) Context-only references | scFoundation primary supplement, Table4 qa-descriptions-20261011-b-source-actinn: abstractText; coverage-source-scfoundation-supp: Supplementary Table 4 (cell type annotation on Zheng68K and Segerstolpe) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 10.1038/s41592-024-02305-7 publisher supplement | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location qa-descriptions-20261011-b-source-actinn: abstractText; coverage-source-scfoundation-supp: Supplementary Table 4 (cell type annotation on Zheng68K and Segerstolpe) Context-only references | Abstract: ACTINN: automated identification of cell types in single cell RNA sequencing qa-descriptions-20261011-b-source-actinn: abstractText; coverage-source-scfoundation-supp: Supplementary Table 4 (cell type annotation on Zheng68K and Segerstolpe) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Europe PMC core record MED/31359028 (title and abstract), Bioinformatics 2020 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. |
| Claimed value Cell-type classifier for single-cell RNA-seq that trains a neural network with three hidden layers on datasets with predefined cell types and predicts cell types in other datasets. Context-only references | scFoundation primary supplement, Table4 qa-descriptions-20261011-b-source-actinn: abstractText; coverage-source-scfoundation-supp: Supplementary Table 4 (cell type annotation on Zheng68K and Segerstolpe) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 10.1038/s41592-024-02305-7 publisher supplement | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Claimed value Cell-type classifier for single-cell RNA-seq that trains a neural network with three hidden layers on datasets with predefined cell types and predicts cell types in other datasets. Context-only references | Abstract: ACTINN: automated identification of cell types in single cell RNA sequencing qa-descriptions-20261011-b-source-actinn: abstractText; coverage-source-scfoundation-supp: Supplementary Table 4 (cell type annotation on Zheng68K and Segerstolpe) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Europe PMC core record MED/31359028 (title and abstract), Bioinformatics 2020 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. |
| Description Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value. Context-only references | scFoundation primary supplement, Table4 qa-descriptions-20261011-b-source-actinn: abstractText; coverage-source-scfoundation-supp: Supplementary Table 4 (cell type annotation on Zheng68K and Segerstolpe) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 10.1038/s41592-024-02305-7 publisher supplement | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description Replace a placeholder description with a sourced functional description (issue #88). Historical releases retain the original value. Context-only references | Abstract: ACTINN: automated identification of cell types in single cell RNA sequencing qa-descriptions-20261011-b-source-actinn: abstractText; coverage-source-scfoundation-supp: Supplementary Table 4 (cell type annotation on Zheng68K and Segerstolpe) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Europe PMC core record MED/31359028 (title and abstract), Bioinformatics 2020 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. |
Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
2 source records and release history
- scFoundation primary supplement, Table4 · Original source · 10.1038/s41592-024-02305-7 publisher supplement
- Abstract: ACTINN: automated identification of cell types in single cell RNA sequencing · Original source · Europe PMC core record MED/31359028 (title and abstract), Bioinformatics 2020
Technical metadata and extraction receipts
Stable ID: metadata-correction-732d490220bdb6dc79a7
- areas
- single-cell
- field
- description
- previous value
- ACTINN cell-type annotation pipeline reported in the primary table; fitting/configuration details unextracted.
- value
- Cell-type classifier for single-cell RNA-seq that trains a neural network with three hidden layers on datasets with predefined cell types and predicts cell types in other datasets.
- source locator
- qa-descriptions-20261011-b-source-actinn: abstractText; coverage-source-scfoundation-supp: Supplementary Table 4 (cell type annotation on Zheng68K and Segerstolpe)
- review
- method: automated-source-review; ai-assisted-source-review; reviewer: claude; reviewer note: Extractor: Claude integrator agent for issue #88. Reviewer: a separate Claude review agent, independent of the extractor; no human review claimed.; date: 2026-10-11; method note: Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record.; note: Approved. Checked the new sources' licences against the arXiv abstract pages and Europe PMC, the 7 scFoundation pipeline descriptions against their abstracts, the language-model descriptions against their model cards and reports, and the TAPE architecture figures against the TAPE paper; all correct. The catalogue entries reuse reviewed profile summaries.; receipt: data/omics/qa-descriptions-20261011-b/review.json
Related records
- subject: ACTINN