Source

Genie 3 primary paper v1, Table 3

bioRxiv preprint · 10.64898/2026.05.01.722168v1; posted 2026-05-05

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Records in this release that cite this source. A record can cite several sources.

13 configurations
1 benchmark
5 protocols
1 dataset subset
65 evaluations
65 results
7 evidence claims

Results

Values as the source printed them. Compare results only under compatible protocols, datasets and metrics.

Model or configuration	Metric	Value	Dataset	Evaluation
Ambient (short)	Designability	0.97 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	Ambient (short) on Genie 3 short monomer generation designability: Unconditional short monomer Designability
Ambient (short)	Genie diversity TM 0 5	0.76 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	Ambient (short) on Genie 3 short monomer generation diversity-tm-05: Unconditional short monomer Diversity, TM < 0.5
Ambient (short)	Genie diversity TM 0 6	0.93 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	Ambient (short) on Genie 3 short monomer generation diversity-tm-06: Unconditional short monomer Diversity, TM < 0.6
Ambient (short)	Genie novelty afdb	0.39 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	Ambient (short) on Genie 3 short monomer generation novelty-afdb: Unconditional short monomer Novelty, AFDB
Ambient (short)	Genie novelty pdb	0.41 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	Ambient (short) on Genie 3 short monomer generation novelty-pdb: Unconditional short monomer Novelty, PDB
FoldFlow 2 (base)	Designability	0.97 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	FoldFlow 2 (base) on Genie 3 short monomer generation designability: Unconditional short monomer Designability
FoldFlow 2 (base)	Genie diversity TM 0 5	0.43 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	FoldFlow 2 (base) on Genie 3 short monomer generation diversity-tm-05: Unconditional short monomer Diversity, TM < 0.5
FoldFlow 2 (base)	Genie diversity TM 0 6	0.77 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	FoldFlow 2 (base) on Genie 3 short monomer generation diversity-tm-06: Unconditional short monomer Diversity, TM < 0.6
FoldFlow 2 (base)	Genie novelty afdb	0.32 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	FoldFlow 2 (base) on Genie 3 short monomer generation novelty-afdb: Unconditional short monomer Novelty, AFDB
FoldFlow 2 (base)	Genie novelty pdb	0.34 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	FoldFlow 2 (base) on Genie 3 short monomer generation novelty-pdb: Unconditional short monomer Novelty, PDB
FoldFlow 2 (reft)	Designability	0.83 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	FoldFlow 2 (reft) on Genie 3 short monomer generation designability: Unconditional short monomer Designability
FoldFlow 2 (reft)	Genie diversity TM 0 5	0.44 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	FoldFlow 2 (reft) on Genie 3 short monomer generation diversity-tm-05: Unconditional short monomer Diversity, TM < 0.5
FoldFlow 2 (reft)	Genie diversity TM 0 6	0.59 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	FoldFlow 2 (reft) on Genie 3 short monomer generation diversity-tm-06: Unconditional short monomer Diversity, TM < 0.6
FoldFlow 2 (reft)	Genie novelty afdb	0.36 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	FoldFlow 2 (reft) on Genie 3 short monomer generation novelty-afdb: Unconditional short monomer Novelty, AFDB
FoldFlow 2 (reft)	Genie novelty pdb	0.36 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	FoldFlow 2 (reft) on Genie 3 short monomer generation novelty-pdb: Unconditional short monomer Novelty, PDB
FrameFlow	Designability	0.90 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	FrameFlow on Genie 3 short monomer generation designability: Unconditional short monomer Designability
FrameFlow	Genie diversity TM 0 5	0.50 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	FrameFlow on Genie 3 short monomer generation diversity-tm-05: Unconditional short monomer Diversity, TM < 0.5
FrameFlow	Genie diversity TM 0 6	0.70 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	FrameFlow on Genie 3 short monomer generation diversity-tm-06: Unconditional short monomer Diversity, TM < 0.6
FrameFlow	Genie novelty afdb	0.33 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	FrameFlow on Genie 3 short monomer generation novelty-afdb: Unconditional short monomer Novelty, AFDB
FrameFlow	Genie novelty pdb	0.34 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	FrameFlow on Genie 3 short monomer generation novelty-pdb: Unconditional short monomer Novelty, PDB
Genie 2	Designability	0.94 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	Genie 2 on Genie 3 short monomer generation designability: Unconditional short monomer Designability
Genie 2	Genie diversity TM 0 5	0.62 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	Genie 2 on Genie 3 short monomer generation diversity-tm-05: Unconditional short monomer Diversity, TM < 0.5
Genie 2	Genie diversity TM 0 6	0.89 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	Genie 2 on Genie 3 short monomer generation diversity-tm-06: Unconditional short monomer Diversity, TM < 0.6
Genie 2	Genie novelty afdb	0.37 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	Genie 2 on Genie 3 short monomer generation novelty-afdb: Unconditional short monomer Novelty, AFDB
Genie 2	Genie novelty pdb	0.39 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	Genie 2 on Genie 3 short monomer generation novelty-pdb: Unconditional short monomer Novelty, PDB
Genie 3	Designability	0.97 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	Genie 3 on Genie 3 short monomer generation designability: Unconditional short monomer Designability
Genie 3	Genie diversity TM 0 5	0.69 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	Genie 3 on Genie 3 short monomer generation diversity-tm-05: Unconditional short monomer Diversity, TM < 0.5
Genie 3	Genie diversity TM 0 6	0.85 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	Genie 3 on Genie 3 short monomer generation diversity-tm-06: Unconditional short monomer Diversity, TM < 0.6
Genie 3	Genie novelty afdb	0.36 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	Genie 3 on Genie 3 short monomer generation novelty-afdb: Unconditional short monomer Novelty, AFDB
Genie 3	Genie novelty pdb	0.37 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	Genie 3 on Genie 3 short monomer generation novelty-pdb: Unconditional short monomer Novelty, PDB
La-Proteina (LD1)	Designability	0.99 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	La-Proteina (LD1) on Genie 3 short monomer generation designability: Unconditional short monomer Designability
La-Proteina (LD1)	Genie diversity TM 0 5	0.44 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	La-Proteina (LD1) on Genie 3 short monomer generation diversity-tm-05: Unconditional short monomer Diversity, TM < 0.5
La-Proteina (LD1)	Genie diversity TM 0 6	0.69 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	La-Proteina (LD1) on Genie 3 short monomer generation diversity-tm-06: Unconditional short monomer Diversity, TM < 0.6
La-Proteina (LD1)	Genie novelty afdb	0.30 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	La-Proteina (LD1) on Genie 3 short monomer generation novelty-afdb: Unconditional short monomer Novelty, AFDB
La-Proteina (LD1)	Genie novelty pdb	0.30 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	La-Proteina (LD1) on Genie 3 short monomer generation novelty-pdb: Unconditional short monomer Novelty, PDB
La-Proteina (LD2)	Designability	0.99 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	La-Proteina (LD2) on Genie 3 short monomer generation designability: Unconditional short monomer Designability
La-Proteina (LD2)	Genie diversity TM 0 5	0.29 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	La-Proteina (LD2) on Genie 3 short monomer generation diversity-tm-05: Unconditional short monomer Diversity, TM < 0.5
La-Proteina (LD2)	Genie diversity TM 0 6	0.50 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	La-Proteina (LD2) on Genie 3 short monomer generation diversity-tm-06: Unconditional short monomer Diversity, TM < 0.6
La-Proteina (LD2)	Genie novelty afdb	0.27 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	La-Proteina (LD2) on Genie 3 short monomer generation novelty-afdb: Unconditional short monomer Novelty, AFDB
La-Proteina (LD2)	Genie novelty pdb	0.27 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	La-Proteina (LD2) on Genie 3 short monomer generation novelty-pdb: Unconditional short monomer Novelty, PDB
Proteina (MFS)	Designability	0.92 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	Proteina (MFS) on Genie 3 short monomer generation designability: Unconditional short monomer Designability
Proteina (MFS)	Genie diversity TM 0 5	0.58 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	Proteina (MFS) on Genie 3 short monomer generation diversity-tm-05: Unconditional short monomer Diversity, TM < 0.5
Proteina (MFS)	Genie diversity TM 0 6	0.78 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	Proteina (MFS) on Genie 3 short monomer generation diversity-tm-06: Unconditional short monomer Diversity, TM < 0.6
Proteina (MFS)	Genie novelty afdb	0.32 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	Proteina (MFS) on Genie 3 short monomer generation novelty-afdb: Unconditional short monomer Novelty, AFDB
Proteina (MFS)	Genie novelty pdb	0.32 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	Proteina (MFS) on Genie 3 short monomer generation novelty-pdb: Unconditional short monomer Novelty, PDB
Proteus	Designability	0.93 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	Proteus on Genie 3 short monomer generation designability: Unconditional short monomer Designability
Proteus	Genie diversity TM 0 5	0.24 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	Proteus on Genie 3 short monomer generation diversity-tm-05: Unconditional short monomer Diversity, TM < 0.5
Proteus	Genie diversity TM 0 6	0.40 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	Proteus on Genie 3 short monomer generation diversity-tm-06: Unconditional short monomer Diversity, TM < 0.6
Proteus	Genie novelty afdb	0.37 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	Proteus on Genie 3 short monomer generation novelty-afdb: Unconditional short monomer Novelty, AFDB
Proteus	Genie novelty pdb	0.37 unitless	500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)	Proteus on Genie 3 short monomer generation novelty-pdb: Unconditional short monomer Novelty, PDB

Claims

Statements this source supports, each with where in the source it was checked.

Genie 3 short monomer generation designability: part of model-coverage-genie3-short-monomers: Part of Genie 3 unconditional short monomer comparison (Appendix B.1–B.3; Table 3, column Designability, PDF pages 18–20)
Genie 3 short monomer generation diversity-tm-05: part of model-coverage-genie3-short-monomers: Part of Genie 3 unconditional short monomer comparison (Appendix B.1–B.3; Table 3, column Diversity, TM < 0.5, PDF pages 18–20)
Genie 3 short monomer generation diversity-tm-06: part of model-coverage-genie3-short-monomers: Part of Genie 3 unconditional short monomer comparison (Appendix B.1–B.3; Table 3, column Diversity, TM < 0.6, PDF pages 18–20)
Genie 3 short monomer generation novelty-afdb: part of model-coverage-genie3-short-monomers: Part of Genie 3 unconditional short monomer comparison (Appendix B.1–B.3; Table 3, column Novelty, AFDB, PDF pages 18–20)
Genie 3 short monomer generation novelty-pdb: part of model-coverage-genie3-short-monomers: Part of Genie 3 unconditional short monomer comparison (Appendix B.1–B.3; Table 3, column Novelty, PDB, PDF pages 18–20)
Genie 3: family discovery-model-genie-3: Family Genie 3 (Appendix B.2–B.3; Table 3, row Genie 3)
RFDiffusion: family discovery-model-rfdiffusion: Family RFdiffusion (Appendix B.2–B.3; Table 3, row RFDiffusion)

Models, benchmarks and other records

Configurations (13)

Benchmarks (1)

Genie 3 unconditional short monomer comparison

Protocols (5)

Dataset subsets (1)

500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)

Evaluations (65)

Evidence

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Evidence table

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13 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Artifact SHA-256 43de8eab49ac74ad9141fbe955703a4e5f7879e0a83cbb547de37fc4e1d3e089 Source metadata	Genie 3 primary paper v1, Table 3 Original source ↗ No field-specific location recorded Version: 10.64898/2026.05.01.722168v1; posted 2026-05-05 Retrieved: 2026-09-23T11:22:04.377971+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_sha256` Source artifact SHA-256: `43de8eab49ac74ad9141fbe955703a4e5f7879e0a83cbb547de37fc4e1d3e089` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Artifact url https://www.biorxiv.org/content/10.64898/2026.05.01.722168v1.full.pdf Source metadata	Genie 3 primary paper v1, Table 3 Original source ↗ No field-specific location recorded Version: 10.64898/2026.05.01.722168v1; posted 2026-05-05 Retrieved: 2026-09-23T11:22:04.377971+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_url` Source artifact SHA-256: `43de8eab49ac74ad9141fbe955703a4e5f7879e0a83cbb547de37fc4e1d3e089` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Retrieved at 2026-09-23T11:22:04.377971+00:00 Source metadata	Genie 3 primary paper v1, Table 3 Original source ↗ No field-specific location recorded Version: 10.64898/2026.05.01.722168v1; posted 2026-05-05 Retrieved: 2026-09-23T11:22:04.377971+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.retrieved_at` Source artifact SHA-256: `43de8eab49ac74ad9141fbe955703a4e5f7879e0a83cbb547de37fc4e1d3e089` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Url https://www.biorxiv.org/content/10.64898/2026.05.01.722168v1 Source metadata	Genie 3 primary paper v1, Table 3 Original source ↗ No field-specific location recorded Version: 10.64898/2026.05.01.722168v1; posted 2026-05-05 Retrieved: 2026-09-23T11:22:04.377971+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.url` Source artifact SHA-256: `43de8eab49ac74ad9141fbe955703a4e5f7879e0a83cbb547de37fc4e1d3e089` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Venue bioRxiv preprint Source metadata	Genie 3 primary paper v1, Table 3 Original source ↗ No field-specific location recorded Version: 10.64898/2026.05.01.722168v1; posted 2026-05-05 Retrieved: 2026-09-23T11:22:04.377971+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.venue` Source artifact SHA-256: `43de8eab49ac74ad9141fbe955703a4e5f7879e0a83cbb547de37fc4e1d3e089` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Version 10.64898/2026.05.01.722168v1; posted 2026-05-05 Source metadata	Genie 3 primary paper v1, Table 3 Original source ↗ No field-specific location recorded Version: 10.64898/2026.05.01.722168v1; posted 2026-05-05 Retrieved: 2026-09-23T11:22:04.377971+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.version` Source artifact SHA-256: `43de8eab49ac74ad9141fbe955703a4e5f7879e0a83cbb547de37fc4e1d3e089` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Description Pinned primary artifact. Review is limited to the cited rows. Source metadata	Genie 3 primary paper v1, Table 3 Original source ↗ No field-specific location recorded Version: 10.64898/2026.05.01.722168v1; posted 2026-05-05 Retrieved: 2026-09-23T11:22:04.377971+00:00	catalogued No individual claim review recorded Audit details Field: `description` Source artifact SHA-256: `43de8eab49ac74ad9141fbe955703a4e5f7879e0a83cbb547de37fc4e1d3e089` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Facets: areas 1 values proteins-complexes Source metadata	Genie 3 primary paper v1, Table 3 Original source ↗ No field-specific location recorded Version: 10.64898/2026.05.01.722168v1; posted 2026-05-05 Retrieved: 2026-09-23T11:22:04.377971+00:00	catalogued No individual claim review recorded Audit details Field: `facets.areas` Source artifact SHA-256: `43de8eab49ac74ad9141fbe955703a4e5f7879e0a83cbb547de37fc4e1d3e089` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Record ID model-coverage-genie3-2026-v1-source Source metadata	Genie 3 primary paper v1, Table 3 Original source ↗ No field-specific location recorded Version: 10.64898/2026.05.01.722168v1; posted 2026-05-05 Retrieved: 2026-09-23T11:22:04.377971+00:00	catalogued No individual claim review recorded Audit details Field: `id` Source artifact SHA-256: `43de8eab49ac74ad9141fbe955703a4e5f7879e0a83cbb547de37fc4e1d3e089` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Record type source Source metadata	Genie 3 primary paper v1, Table 3 Original source ↗ No field-specific location recorded Version: 10.64898/2026.05.01.722168v1; posted 2026-05-05 Retrieved: 2026-09-23T11:22:04.377971+00:00	catalogued No individual claim review recorded Audit details Field: `kind` Source artifact SHA-256: `43de8eab49ac74ad9141fbe955703a4e5f7879e0a83cbb547de37fc4e1d3e089` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Stable ID: model-coverage-genie3-2026-v1-source

areas: proteins-complexes
url: https://www.biorxiv.org/content/10.64898/2026.05.01.722168v1
artifact url: https://www.biorxiv.org/content/10.64898/2026.05.01.722168v1.full.pdf
artifact sha256: 43de8eab49ac74ad9141fbe955703a4e5f7879e0a83cbb547de37fc4e1d3e089
retrieved at: 2026-09-23T11:22:04.377971+00:00
venue: bioRxiv preprint
version: 10.64898/2026.05.01.722168v1; posted 2026-05-05

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