LAMBDA: A Prophage Detection Benchmark for Genomic Language Models
2026 · PMC13041943.1 · Preprint
What this source contributed
Records in this release that cite this source. A record can cite several sources.
Results
Values as the source printed them. Compare results only under compatible protocols, datasets and metrics.
Claims
Statements this source supports, each with where in the source it was checked.
- EVO2: family Evo 2: Family Evo 2 (NABench model inventory explicit Evo2-7B / Evo2-7B-base; LAMBDA Table 1 explicit EVO2 7B; official Evo2 7B checkpoint list | Existing reviewed locator: Materials and Methods/LAMBDA Benchmark Dataset Construction. (paragraph 1); Abstract (paragraph 1))
- EVO2: family Evo 2: Family Evo 2 (Primary paper model-inventory and results tables: mRNABench Table 2; NABench model inventory; LAMBDA Table 1 (EVO2 7B); source-labelled configuration EVO2 | Existing reviewed locator: Materials and Methods/LAMBDA Benchmark Dataset Construction. (paragraph 1); Abstract (paragraph 1))
- Reported MCC for EVO2: Printed value 0.680 (Table 5, EVO2 row, MCC column)
- Reported MCC for geNomad: Printed value 0.794 (Table 5, geNomad row, MCC column)
Models, benchmarks and other records
Configurations (2)
Tasks (1)
Datasets (1)
Evaluations (2)
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
18 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Artifact retrieved at 2026-09-16T10:33:36.240Z Source metadata | LAMBDA: A Prophage Detection Benchmark for Genomic Language Models No field-specific location recorded Version: PMC13041943.1 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Artifact SHA-256 22c2e218e87dce757907f6086a0e2ad37c13f785b34fff5bea7cfa1a6c276b16 Source metadata | LAMBDA: A Prophage Detection Benchmark for Genomic Language Models No field-specific location recorded Version: PMC13041943.1 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Artifact url https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13041943/fullTextXML Source metadata | LAMBDA: A Prophage Detection Benchmark for Genomic Language Models No field-specific location recorded Version: PMC13041943.1 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Doi 10.64898/2026.03.26.714501 Source metadata | LAMBDA: A Prophage Detection Benchmark for Genomic Language Models No field-specific location recorded Version: PMC13041943.1 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Missing metadata: licence: reason unextracted Source metadata | LAMBDA: A Prophage Detection Benchmark for Genomic Language Models No field-specific location recorded Version: PMC13041943.1 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Publication status preprint Source metadata | LAMBDA: A Prophage Detection Benchmark for Genomic Language Models No field-specific location recorded Version: PMC13041943.1 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Retrieved at 2026-09-15T23:25:00Z Source metadata | LAMBDA: A Prophage Detection Benchmark for Genomic Language Models No field-specific location recorded Version: PMC13041943.1 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Scope decision included Source metadata | LAMBDA: A Prophage Detection Benchmark for Genomic Language Models No field-specific location recorded Version: PMC13041943.1 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Url https://pmc.ncbi.nlm.nih.gov/articles/PMC13041943/ Source metadata | LAMBDA: A Prophage Detection Benchmark for Genomic Language Models No field-specific location recorded Version: PMC13041943.1 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Version PMC13041943.1 Source metadata | LAMBDA: A Prophage Detection Benchmark for Genomic Language Models No field-specific location recorded Version: PMC13041943.1 | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: discovered
Primary paper retained with its original identifier. Metadata inherited from the literature collection; individual result checks are separate.
Technical metadata and extraction receipts
Stable ID: lambda-prophage-2026
- areas
- microbes-communities
- url
- https://pmc.ncbi.nlm.nih.gov/articles/PMC13041943/
- version
- PMC13041943.1
- retrieved at
- 2026-09-15T23:25:00Z
- doi
- 10.64898/2026.03.26.714501
- publication status
- preprint
- year
- 2026
- artifact sha256
- 22c2e218e87dce757907f6086a0e2ad37c13f785b34fff5bea7cfa1a6c276b16
- artifact url
- https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13041943/fullTextXML
- artifact retrieved at
- 2026-09-16T10:33:36.240Z
- scope decision
- included
- missing metadata
- licence: reason: unextracted