Source

Conformation-aware structure prediction of antigen-recognizing immune proteins

2025 · PMC archival version PMC12710905.1 · Peer-reviewed

DOI: 10.1080/19420862.2025.2602217 Original source

What this source contributed

Records in this release that cite this source. A record can cite several sources.

2 configurations
1 task
1 dataset
2 evaluations
2 results
3 evidence claims

Results

Values as the source printed them. Compare results only under compatible protocols, datasets and metrics.

Model or configuration	Metric	Value	Dataset	Evaluation
Chai-1	RMSD (cdr h3 loop, mean over antibodies)	2.65 angstrom	ImmuneBuilder antibody test set	Chai-1: Antibody loop structure prediction
Ibex	RMSD (cdr h3 loop, mean over antibodies)	2.72 angstrom	ImmuneBuilder antibody test set	Ibex: Antibody loop structure prediction

Claims

Statements this source supports, each with where in the source it was checked.

Chai-1: family Chai-1: Family Chai-1 (Structure prediction model comparison; Chai-1 using a single seed and diffusion trajectory)
Reported Mean CDR H3 RMSD for Chai-1: Printed value 2.65 (Table 1, Antibodies / Chai-1 row, CDR H3 column)
Reported Mean CDR H3 RMSD for Ibex: Printed value 2.72 (Table 1, Antibodies / Ibex row, CDR H3 column)

Models, benchmarks and other records

Configurations (2)

Tasks (1)

Antibody loop structure prediction

Datasets (1)

ImmuneBuilder antibody test set

Evaluations (2)

Evidence

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Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

18 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Artifact retrieved at 2026-09-16T10:44:03.426811+00:00 Source metadata	Conformation-aware structure prediction of antigen-recognizing immune proteins Original source ↗ No field-specific location recorded Version: PMC archival version PMC12710905.1 Retrieved: 2026-09-16T10:44:03.426811+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_retrieved_at` Source artifact SHA-256: `caa1109bd5fe7f6be703aa9d4afd6f4f1522bcbce6b7361650eb59618c2a9e14` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Artifact SHA-256 caa1109bd5fe7f6be703aa9d4afd6f4f1522bcbce6b7361650eb59618c2a9e14 Source metadata	Conformation-aware structure prediction of antigen-recognizing immune proteins Original source ↗ No field-specific location recorded Version: PMC archival version PMC12710905.1 Retrieved: 2026-09-16T10:44:03.426811+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_sha256` Source artifact SHA-256: `caa1109bd5fe7f6be703aa9d4afd6f4f1522bcbce6b7361650eb59618c2a9e14` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Artifact url https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12710905/fullTextXML Source metadata	Conformation-aware structure prediction of antigen-recognizing immune proteins Original source ↗ No field-specific location recorded Version: PMC archival version PMC12710905.1 Retrieved: 2026-09-16T10:44:03.426811+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_url` Source artifact SHA-256: `caa1109bd5fe7f6be703aa9d4afd6f4f1522bcbce6b7361650eb59618c2a9e14` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Doi 10.1080/19420862.2025.2602217 Source metadata	Conformation-aware structure prediction of antigen-recognizing immune proteins Original source ↗ No field-specific location recorded Version: PMC archival version PMC12710905.1 Retrieved: 2026-09-16T10:44:03.426811+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.doi` Source artifact SHA-256: `caa1109bd5fe7f6be703aa9d4afd6f4f1522bcbce6b7361650eb59618c2a9e14` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Missing metadata: licence: reason unextracted Source metadata	Conformation-aware structure prediction of antigen-recognizing immune proteins Original source ↗ No field-specific location recorded Version: PMC archival version PMC12710905.1 Retrieved: 2026-09-16T10:44:03.426811+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.missing_metadata.licence.reason` Source artifact SHA-256: `caa1109bd5fe7f6be703aa9d4afd6f4f1522bcbce6b7361650eb59618c2a9e14` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Publication status peer_reviewed Source metadata	Conformation-aware structure prediction of antigen-recognizing immune proteins Original source ↗ No field-specific location recorded Version: PMC archival version PMC12710905.1 Retrieved: 2026-09-16T10:44:03.426811+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.publication_status` Source artifact SHA-256: `caa1109bd5fe7f6be703aa9d4afd6f4f1522bcbce6b7361650eb59618c2a9e14` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Retrieved at 2026-09-15T23:29:32Z Source metadata	Conformation-aware structure prediction of antigen-recognizing immune proteins Original source ↗ No field-specific location recorded Version: PMC archival version PMC12710905.1 Retrieved: 2026-09-16T10:44:03.426811+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.retrieved_at` Source artifact SHA-256: `caa1109bd5fe7f6be703aa9d4afd6f4f1522bcbce6b7361650eb59618c2a9e14` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Scope decision included Source metadata	Conformation-aware structure prediction of antigen-recognizing immune proteins Original source ↗ No field-specific location recorded Version: PMC archival version PMC12710905.1 Retrieved: 2026-09-16T10:44:03.426811+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.scope_decision` Source artifact SHA-256: `caa1109bd5fe7f6be703aa9d4afd6f4f1522bcbce6b7361650eb59618c2a9e14` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Url https://pmc.ncbi.nlm.nih.gov/articles/PMC12710905/ Source metadata	Conformation-aware structure prediction of antigen-recognizing immune proteins Original source ↗ No field-specific location recorded Version: PMC archival version PMC12710905.1 Retrieved: 2026-09-16T10:44:03.426811+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.url` Source artifact SHA-256: `caa1109bd5fe7f6be703aa9d4afd6f4f1522bcbce6b7361650eb59618c2a9e14` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Version PMC archival version PMC12710905.1 Source metadata	Conformation-aware structure prediction of antigen-recognizing immune proteins Original source ↗ No field-specific location recorded Version: PMC archival version PMC12710905.1 Retrieved: 2026-09-16T10:44:03.426811+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.version` Source artifact SHA-256: `caa1109bd5fe7f6be703aa9d4afd6f4f1522bcbce6b7361650eb59618c2a9e14` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Release 2026-11-02-a7f03c9e55a5 · Record review: discovered

Primary paper retained with its original identifier. Metadata inherited from the literature collection; individual result checks are separate.

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Technical metadata and extraction receipts

Stable ID: ibex-2025

areas: molecular-interactions
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC12710905/
version: PMC archival version PMC12710905.1
retrieved at: 2026-09-15T23:29:32Z
doi: 10.1080/19420862.2025.2602217
publication status: peer_reviewed
year: 2025
artifact sha256: caa1109bd5fe7f6be703aa9d4afd6f4f1522bcbce6b7361650eb59618c2a9e14
artifact url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12710905/fullTextXML
artifact retrieved at: 2026-09-16T10:44:03.426811+00:00
scope decision: included
missing metadata: licence: reason: unextracted

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