Result

2.72 Mean CDR H3 RMSD

Ibex · Mean CDR H3 RMSD · ImmuneBuilder antibody test set

Tested configuration: Ibex
Task: Antibody loop structure prediction
Dataset: ImmuneBuilder antibody test set
Procedure: Backbone RMSD after framework alignment; average over antibody test structures.
Evaluation: Ibex: Antibody loop structure prediction
Coverage: scored: unreported; eligible: unreported
Uncertainty: Not reported
Evidence: Author-reported evaluation · source checkedConformation-aware structure prediction of antigen-recognizing immune proteins · Table 1, Antibodies / Ibex row, CDR H3 column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Reproduction

Split: Not reported
Adaptation: Not reported
Scoring implementation: Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Access requirements and official instructions: Antibody loop structure prediction

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statement	Original source and location	Review and provenance
attributes.printed_value 2.72 Individual claims	Conformation-aware structure prediction of antigen-recognizing immune proteins Original source ↗ Table 1, Antibodies / Ibex row, CDR H3 column Version: PMC archival version PMC12710905.1 Retrieved: 2026-09-16T10:44:03.426811+00:00	source checked independent ai table review · 2026-09-16T10:44:03.426811+00:00 author reported Audit details First Antibodies block, CDR H3 mean RMSD in Angstrom; excludes later Nanobodies and TCR blocks. Source check verifies central value and table context, not experiment reproduction or all metadata. Field: `attributes.printed_value` Claim: claim-lit-b3-040 Source artifact SHA-256: `caa1109bd5fe7f6be703aa9d4afd6f4f1522bcbce6b7361650eb59618c2a9e14` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `caa1109bd5fe7f6be703aa9d4afd6f4f1522bcbce6b7361650eb59618c2a9e14` Extraction artifact

All evidence (CSV)All evidence (JSONL)How to read the evidence

Sources and history

View linked audit checks and correction history

Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release history

Conformation-aware structure prediction of antigen-recognizing immune proteins · Original source · PMC archival version PMC12710905.1

Download this release

Technical metadata and extraction receipts

Stable ID: lit-b3-040

areas: molecular-interactions
tasks: Antibody loop structure prediction
printed value: 2.72
numeric value: 2.72
metric: Mean CDR H3 RMSD
metric direction: unknown
unit: Å
uncertainty: Not reported
source locator: Table 1, Antibodies / Ibex row, CDR H3 column
review: method: independent_ai_table_review; reviewer: Codex omics research agent; independent source-table review, not human review; reviewed at: 2026-09-16T10:44:03.426811+00:00; notes: First Antibodies block, CDR H3 mean RMSD in Angstrom; excludes later Nanobodies and TCR blocks. Source check verifies central value and table context, not experiment reproduction or all metadata.; evidence: {"table_xml_id": "t0001", "row_cells": ["", "Ibex", "0.61", "0.57", "2.72", "0.45", "0.57", "0.43", "0.98", "0.52"], "selected_cell_zero_based": 4, "selected_cell_xml": "<td align=\"center\" colspan=\"1\" rowspan=\"1\"><italic toggle=\"yes\">2.72</italic></td>", "caption": "Average RMSD in angstrom, evaluated separately for each region on the ImmuneBuilder test set of antibodies, nanobodies and TCRs."}; artifact sha256: caa1109bd5fe7f6be703aa9d4afd6f4f1522bcbce6b7361650eb59618c2a9e14; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12710905/fullTextXML
legacy id: lit-b3-040
legacy row: id: lit-b3-040; paper id: ibex-2025; domain id: molecular-interactions; task: Antibody loop structure prediction; model: Ibex; model version: Not reported; dataset: ImmuneBuilder antibody test set; dataset version: Not reported; split: Not reported; metric: Mean CDR H3 RMSD; value: 2.72; unit: Å; uncertainty: Not reported; protocol: Backbone RMSD after framework alignment; average over antibody test structures.; source locator: Table 1, Antibodies / Ibex row, CDR H3 column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC12710905/; evaluation origin: author_reported; reviewed utc: 2026-09-15T23:29:32Z
missing metadata: model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract

Related records

evaluation: Ibex: Antibody loop structure prediction
subject: Reported Mean CDR H3 RMSD for Ibex

Suggest a correction