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songlab-cal/gpn docs/models/gpn-msa.md at commit dc5fd287

git commit dc5fd287599f2955a79d010bca0e0f7f8178c67e (main, committed 2026-09-26) · Project source

Original source

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Records in this release that cite this source. A record can cite several sources.

1 model
1 configuration
1 dataset
1 evidence claim

Claims

Statements this source supports, each with where in the source it was checked.

maintenance_status: GPN-MSA: Maintenance status The official repository says GPN-MSA is deprecated in favour of GPN-Star: the maintained package supports inference from the published model (songlab/gpn-msa-sapiens) but not GPN-MSA training. It requires aligned genomes for training and inference. (docs/models/gpn-msa.md paragraph 1 and 'Model and evaluations'; README model table row 'GPN-MSA')

Models, benchmarks and other records

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

25 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statement	Original source and location	Review and provenance
attributes.artifact_sha256 8076d5e5ced9447904acc6fce3352030299e8701220f738b047fcefd0a1edaee Source metadata	songlab-cal/gpn docs/models/gpn-msa.md at commit dc5fd287 Original source ↗ No field-specific location recorded Version: git commit dc5fd287599f2955a79d010bca0e0f7f8178c67e (main, committed 2026-09-26) Retrieved: 2026-10-14T12:06:06Z	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_sha256` Source artifact SHA-256: `8076d5e5ced9447904acc6fce3352030299e8701220f738b047fcefd0a1edaee` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Artifact url https://raw.githubusercontent.com/songlab-cal/gpn/dc5fd287599f2955a79d010bca0e0f7f8178c67e/docs/models/gpn-msa.md Source metadata	songlab-cal/gpn docs/models/gpn-msa.md at commit dc5fd287 Original source ↗ No field-specific location recorded Version: git commit dc5fd287599f2955a79d010bca0e0f7f8178c67e (main, committed 2026-09-26) Retrieved: 2026-10-14T12:06:06Z	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_url` Source artifact SHA-256: `8076d5e5ced9447904acc6fce3352030299e8701220f738b047fcefd0a1edaee` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Licence MIT Source metadata	songlab-cal/gpn docs/models/gpn-msa.md at commit dc5fd287 Original source ↗ No field-specific location recorded Version: git commit dc5fd287599f2955a79d010bca0e0f7f8178c67e (main, committed 2026-09-26) Retrieved: 2026-10-14T12:06:06Z	catalogued No individual claim review recorded Audit details Field: `attributes.licence` Source artifact SHA-256: `8076d5e5ced9447904acc6fce3352030299e8701220f738b047fcefd0a1edaee` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Media type text/markdown Source metadata	songlab-cal/gpn docs/models/gpn-msa.md at commit dc5fd287 Original source ↗ No field-specific location recorded Version: git commit dc5fd287599f2955a79d010bca0e0f7f8178c67e (main, committed 2026-09-26) Retrieved: 2026-10-14T12:06:06Z	catalogued No individual claim review recorded Audit details Field: `attributes.media_type` Source artifact SHA-256: `8076d5e5ced9447904acc6fce3352030299e8701220f738b047fcefd0a1edaee` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Publication status official_project_source Source metadata	songlab-cal/gpn docs/models/gpn-msa.md at commit dc5fd287 Original source ↗ No field-specific location recorded Version: git commit dc5fd287599f2955a79d010bca0e0f7f8178c67e (main, committed 2026-09-26) Retrieved: 2026-10-14T12:06:06Z	catalogued No individual claim review recorded Audit details Field: `attributes.publication_status` Source artifact SHA-256: `8076d5e5ced9447904acc6fce3352030299e8701220f738b047fcefd0a1edaee` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Retrieved at 2026-10-14T12:06:06Z Source metadata	songlab-cal/gpn docs/models/gpn-msa.md at commit dc5fd287 Original source ↗ No field-specific location recorded Version: git commit dc5fd287599f2955a79d010bca0e0f7f8178c67e (main, committed 2026-09-26) Retrieved: 2026-10-14T12:06:06Z	catalogued No individual claim review recorded Audit details Field: `attributes.retrieved_at` Source artifact SHA-256: `8076d5e5ced9447904acc6fce3352030299e8701220f738b047fcefd0a1edaee` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.review.artifact_sha256 8076d5e5ced9447904acc6fce3352030299e8701220f738b047fcefd0a1edaee Source metadata	songlab-cal/gpn docs/models/gpn-msa.md at commit dc5fd287 Original source ↗ No field-specific location recorded Version: git commit dc5fd287599f2955a79d010bca0e0f7f8178c67e (main, committed 2026-09-26) Retrieved: 2026-10-14T12:06:06Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.artifact_sha256` Source artifact SHA-256: `8076d5e5ced9447904acc6fce3352030299e8701220f738b047fcefd0a1edaee` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Review: date 2026-10-14 Source metadata	songlab-cal/gpn docs/models/gpn-msa.md at commit dc5fd287 Original source ↗ No field-specific location recorded Version: git commit dc5fd287599f2955a79d010bca0e0f7f8178c67e (main, committed 2026-09-26) Retrieved: 2026-10-14T12:06:06Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.date` Source artifact SHA-256: `8076d5e5ced9447904acc6fce3352030299e8701220f738b047fcefd0a1edaee` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Review: method note Re-downloaded at commit dc5fd287 on 2026-10-14; SHA-256 matches. Source metadata	songlab-cal/gpn docs/models/gpn-msa.md at commit dc5fd287 Original source ↗ No field-specific location recorded Version: git commit dc5fd287599f2955a79d010bca0e0f7f8178c67e (main, committed 2026-09-26) Retrieved: 2026-10-14T12:06:06Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.method_note` Source artifact SHA-256: `8076d5e5ced9447904acc6fce3352030299e8701220f738b047fcefd0a1edaee` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Review method 1 values source-hash-verification Source metadata	songlab-cal/gpn docs/models/gpn-msa.md at commit dc5fd287 Original source ↗ No field-specific location recorded Version: git commit dc5fd287599f2955a79d010bca0e0f7f8178c67e (main, committed 2026-09-26) Retrieved: 2026-10-14T12:06:06Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.method` Source artifact SHA-256: `8076d5e5ced9447904acc6fce3352030299e8701220f738b047fcefd0a1edaee` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

How to read the evidence

Sources and history

Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

Official GPN repository file by the GPN-MSA authors, pinned to a commit.

Release history

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Technical metadata and extraction receipts

Stable ID: gfm-guides-20261014-gpnmsa-source-gpn-msa-doc

areas: dna-genomes
contexts: research
url: https://github.com/songlab-cal/gpn
artifact url: https://raw.githubusercontent.com/songlab-cal/gpn/dc5fd287599f2955a79d010bca0e0f7f8178c67e/docs/models/gpn-msa.md
version: git commit dc5fd287599f2955a79d010bca0e0f7f8178c67e (main, committed 2026-09-26)
retrieved at: 2026-10-14T12:06:06Z
artifact sha256: 8076d5e5ced9447904acc6fce3352030299e8701220f738b047fcefd0a1edaee
publication status: official_project_source
licence: MIT
media type: text/markdown
source locator: docs/models/gpn-msa.md, all sections
review: method: source-hash-verification; method note: Re-downloaded at commit dc5fd287 on 2026-10-14; SHA-256 matches.; reviewer: claude; reviewer note: Claude (Opus 5.5) research agent, independent of the extractor; no human review claimed; date: 2026-10-14; artifact sha256: 8076d5e5ced9447904acc6fce3352030299e8701220f738b047fcefd0a1edaee; retrieval url: https://raw.githubusercontent.com/songlab-cal/gpn/dc5fd287599f2955a79d010bca0e0f7f8178c67e/docs/models/gpn-msa.md; note: Independent review 2026-10-14.

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What this source contributed

Claims

Models, benchmarks and other records

Models (1)

Configurations (1)

Datasets (1)

Evidence

Evidence table

Sources and history