rewirebio.iobenchmarks
Evidence claim

maintenance_status: GPN-MSA

Maintenance status of GPN-MSA

The official repository says GPN-MSA is deprecated in favour of GPN-Star: the maintained package supports inference from the published model (songlab/gpn-msa-sapiens) but not GPN-MSA training. It requires aligned genomes for training and inference.

Descriptive fact transcribed from the pinned source.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

12 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statementOriginal source and locationReview and provenance
Claimed field
maintenance_status
Context-only references
songlab-cal/gpn docs/models/gpn-msa.md at commit dc5fd287

Original source ↗

docs/models/gpn-msa.md paragraph 1 and 'Model and evaluations'; README model table row 'GPN-MSA'

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: git commit dc5fd287599f2955a79d010bca0e0f7f8178c67e (main, committed 2026-09-26)
Retrieved: 2026-10-14T12:06:06Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.field

Source artifact SHA-256: 8076d5e5ced9447904acc6fce3352030299e8701220f738b047fcefd0a1edaee

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Claimed field
maintenance_status
Context-only references
songlab-cal/gpn README at commit dc5fd287

Original source ↗

docs/models/gpn-msa.md paragraph 1 and 'Model and evaluations'; README model table row 'GPN-MSA'

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: git commit dc5fd287599f2955a79d010bca0e0f7f8178c67e (main, committed 2026-09-26)
Retrieved: 2026-10-14T12:05:43Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.field

Source artifact SHA-256: 0312fb9646aef630a30cd3039337b31a48f4345f4dd1cdd71edcc483afd8b9d0

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Source location
docs/models/gpn-msa.md paragraph 1 and 'Model and evaluations'; README model table row 'GPN-MSA'
Context-only references
songlab-cal/gpn docs/models/gpn-msa.md at commit dc5fd287

Original source ↗

docs/models/gpn-msa.md paragraph 1 and 'Model and evaluations'; README model table row 'GPN-MSA'

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: git commit dc5fd287599f2955a79d010bca0e0f7f8178c67e (main, committed 2026-09-26)
Retrieved: 2026-10-14T12:06:06Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.source_locator

Source artifact SHA-256: 8076d5e5ced9447904acc6fce3352030299e8701220f738b047fcefd0a1edaee

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Source location
docs/models/gpn-msa.md paragraph 1 and 'Model and evaluations'; README model table row 'GPN-MSA'
Context-only references
songlab-cal/gpn README at commit dc5fd287

Original source ↗

docs/models/gpn-msa.md paragraph 1 and 'Model and evaluations'; README model table row 'GPN-MSA'

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: git commit dc5fd287599f2955a79d010bca0e0f7f8178c67e (main, committed 2026-09-26)
Retrieved: 2026-10-14T12:05:43Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.source_locator

Source artifact SHA-256: 0312fb9646aef630a30cd3039337b31a48f4345f4dd1cdd71edcc483afd8b9d0

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Claimed value
The official repository says GPN-MSA is deprecated in favour of GPN-Star: the maintained package supports inference from the published model (songlab/gpn-msa-sapiens) but not GPN-MSA training. It requires aligned genomes for training and inference.
Context-only references
songlab-cal/gpn docs/models/gpn-msa.md at commit dc5fd287

Original source ↗

docs/models/gpn-msa.md paragraph 1 and 'Model and evaluations'; README model table row 'GPN-MSA'

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: git commit dc5fd287599f2955a79d010bca0e0f7f8178c67e (main, committed 2026-09-26)
Retrieved: 2026-10-14T12:06:06Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.value

Source artifact SHA-256: 8076d5e5ced9447904acc6fce3352030299e8701220f738b047fcefd0a1edaee

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Claimed value
The official repository says GPN-MSA is deprecated in favour of GPN-Star: the maintained package supports inference from the published model (songlab/gpn-msa-sapiens) but not GPN-MSA training. It requires aligned genomes for training and inference.
Context-only references
songlab-cal/gpn README at commit dc5fd287

Original source ↗

docs/models/gpn-msa.md paragraph 1 and 'Model and evaluations'; README model table row 'GPN-MSA'

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: git commit dc5fd287599f2955a79d010bca0e0f7f8178c67e (main, committed 2026-09-26)
Retrieved: 2026-10-14T12:05:43Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.value

Source artifact SHA-256: 0312fb9646aef630a30cd3039337b31a48f4345f4dd1cdd71edcc483afd8b9d0

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Description
Descriptive fact transcribed from the pinned source.
Context-only references
songlab-cal/gpn docs/models/gpn-msa.md at commit dc5fd287

Original source ↗

docs/models/gpn-msa.md paragraph 1 and 'Model and evaluations'; README model table row 'GPN-MSA'

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: git commit dc5fd287599f2955a79d010bca0e0f7f8178c67e (main, committed 2026-09-26)
Retrieved: 2026-10-14T12:06:06Z

not individually reviewed

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: 8076d5e5ced9447904acc6fce3352030299e8701220f738b047fcefd0a1edaee

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Description
Descriptive fact transcribed from the pinned source.
Context-only references
songlab-cal/gpn README at commit dc5fd287

Original source ↗

docs/models/gpn-msa.md paragraph 1 and 'Model and evaluations'; README model table row 'GPN-MSA'

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: git commit dc5fd287599f2955a79d010bca0e0f7f8178c67e (main, committed 2026-09-26)
Retrieved: 2026-10-14T12:05:43Z

not individually reviewed

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: 0312fb9646aef630a30cd3039337b31a48f4345f4dd1cdd71edcc483afd8b9d0

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Relationship: subject
gfm-guides-20261014-gpnmsa-model-gpn-msa
Context-only references
songlab-cal/gpn docs/models/gpn-msa.md at commit dc5fd287

Original source ↗

docs/models/gpn-msa.md paragraph 1 and 'Model and evaluations'; README model table row 'GPN-MSA'

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: git commit dc5fd287599f2955a79d010bca0e0f7f8178c67e (main, committed 2026-09-26)
Retrieved: 2026-10-14T12:06:06Z

not individually reviewed

No individual claim review recorded

Audit details

Field: links:subject:gfm-guides-20261014-gpnmsa-model-gpn-msa

Source artifact SHA-256: 8076d5e5ced9447904acc6fce3352030299e8701220f738b047fcefd0a1edaee

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Relationship: subject
gfm-guides-20261014-gpnmsa-model-gpn-msa
Context-only references
songlab-cal/gpn README at commit dc5fd287

Original source ↗

docs/models/gpn-msa.md paragraph 1 and 'Model and evaluations'; README model table row 'GPN-MSA'

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: git commit dc5fd287599f2955a79d010bca0e0f7f8178c67e (main, committed 2026-09-26)
Retrieved: 2026-10-14T12:05:43Z

not individually reviewed

No individual claim review recorded

Audit details

Field: links:subject:gfm-guides-20261014-gpnmsa-model-gpn-msa

Source artifact SHA-256: 0312fb9646aef630a30cd3039337b31a48f4345f4dd1cdd71edcc483afd8b9d0

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

How to read the evidence

Sources and history

Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

2 source records and release historyDownload this release (gzip)
Technical metadata and extraction receipts

Stable ID: gfm-guides-20261014-gpnmsa-claim-gpn-msa-maintenance-status

field
maintenance_status
value
The official repository says GPN-MSA is deprecated in favour of GPN-Star: the maintained package supports inference from the published model (songlab/gpn-msa-sapiens) but not GPN-MSA training. It requires aligned genomes for training and inference.
source locator
docs/models/gpn-msa.md paragraph 1 and 'Model and evaluations'; README model table row 'GPN-MSA'
review
method: source-hash-verification; transcription; method note: README and docs/models/gpn-msa.md re-downloaded at commit dc5fd287; SHA-256 values match; text re-read.; reviewer: claude; reviewer note: Claude (Opus 5.5) research agent, independent of the extractor; no human review claimed; date: 2026-10-14; artifact sha256: 8076d5e5ced9447904acc6fce3352030299e8701220f738b047fcefd0a1edaee; retrieval url: https://raw.githubusercontent.com/songlab-cal/gpn/dc5fd287599f2955a79d010bca0e0f7f8178c67e/docs/models/gpn-msa.md; note: Independent review 2026-10-14: matched.
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