Source

Ensemble docking for intrinsically disordered proteins

2025 · preprint archived 2025-01-26 · Preprint

DOI: 10.1101/2025.01.23.634614 Original source

What this source contributed

Records in this release that cite this source. A record can cite several sources.

2 configurations
1 task
1 dataset
2 evaluations
2 results
2 evidence claims

Results

Values as the source printed them. Compare results only under compatible protocols, datasets and metrics.

Model or configuration	Metric	Value	Dataset	Evaluation
AutoDock Vina holo	Success rate (best-matched RMSD under 3 å per docked frame)	27.96 percent	α-synuclein Ligand 47 MD ensemble	AutoDock Vina holo: Intrinsically disordered protein ensemble docking
DiffDock holo	Success rate (best-matched RMSD under 3 å per docked frame)	21.32 percent	α-synuclein Ligand 47 MD ensemble	DiffDock holo: Intrinsically disordered protein ensemble docking

Claims

Statements this source supports, each with where in the source it was checked.

Reported Docked frames best-matched RMSD <3 Å for AutoDock Vina holo: Printed value 27.96 (Table 2, Ligand 47 row, AutoDock Vina Holo Docking column)
Reported Docked frames best-matched RMSD <3 Å for DiffDock holo: Printed value 21.32 (Table 2, Ligand 47 row, DiffDock Holo Docking column)

Models, benchmarks and other records

Configurations (2)

Tasks (1)

Intrinsically disordered protein ensemble docking

Datasets (1)

α-synuclein Ligand 47 MD ensemble

Evaluations (2)

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

18 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Artifact retrieved at 2026-09-16T10:33:56.275Z Source metadata	Ensemble docking for intrinsically disordered proteins Original source ↗ No field-specific location recorded Version: preprint archived 2025-01-26 Retrieved: 2026-09-16T10:33:56.275Z	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_retrieved_at` Source artifact SHA-256: `d02d91cdde41cb76ec5c86b532dffc564879c69e764a8c6b7752460fbbfd24b7` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Artifact SHA-256 d02d91cdde41cb76ec5c86b532dffc564879c69e764a8c6b7752460fbbfd24b7 Source metadata	Ensemble docking for intrinsically disordered proteins Original source ↗ No field-specific location recorded Version: preprint archived 2025-01-26 Retrieved: 2026-09-16T10:33:56.275Z	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_sha256` Source artifact SHA-256: `d02d91cdde41cb76ec5c86b532dffc564879c69e764a8c6b7752460fbbfd24b7` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Artifact url https://www.ebi.ac.uk/europepmc/webservices/rest/PMC11785235/fullTextXML Source metadata	Ensemble docking for intrinsically disordered proteins Original source ↗ No field-specific location recorded Version: preprint archived 2025-01-26 Retrieved: 2026-09-16T10:33:56.275Z	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_url` Source artifact SHA-256: `d02d91cdde41cb76ec5c86b532dffc564879c69e764a8c6b7752460fbbfd24b7` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Doi 10.1101/2025.01.23.634614 Source metadata	Ensemble docking for intrinsically disordered proteins Original source ↗ No field-specific location recorded Version: preprint archived 2025-01-26 Retrieved: 2026-09-16T10:33:56.275Z	catalogued No individual claim review recorded Audit details Field: `attributes.doi` Source artifact SHA-256: `d02d91cdde41cb76ec5c86b532dffc564879c69e764a8c6b7752460fbbfd24b7` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Missing metadata: licence: reason unextracted Source metadata	Ensemble docking for intrinsically disordered proteins Original source ↗ No field-specific location recorded Version: preprint archived 2025-01-26 Retrieved: 2026-09-16T10:33:56.275Z	catalogued No individual claim review recorded Audit details Field: `attributes.missing_metadata.licence.reason` Source artifact SHA-256: `d02d91cdde41cb76ec5c86b532dffc564879c69e764a8c6b7752460fbbfd24b7` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Publication status preprint Source metadata	Ensemble docking for intrinsically disordered proteins Original source ↗ No field-specific location recorded Version: preprint archived 2025-01-26 Retrieved: 2026-09-16T10:33:56.275Z	catalogued No individual claim review recorded Audit details Field: `attributes.publication_status` Source artifact SHA-256: `d02d91cdde41cb76ec5c86b532dffc564879c69e764a8c6b7752460fbbfd24b7` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Retrieved at 2026-09-15T23:29:32Z Source metadata	Ensemble docking for intrinsically disordered proteins Original source ↗ No field-specific location recorded Version: preprint archived 2025-01-26 Retrieved: 2026-09-16T10:33:56.275Z	catalogued No individual claim review recorded Audit details Field: `attributes.retrieved_at` Source artifact SHA-256: `d02d91cdde41cb76ec5c86b532dffc564879c69e764a8c6b7752460fbbfd24b7` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Scope decision included Source metadata	Ensemble docking for intrinsically disordered proteins Original source ↗ No field-specific location recorded Version: preprint archived 2025-01-26 Retrieved: 2026-09-16T10:33:56.275Z	catalogued No individual claim review recorded Audit details Field: `attributes.scope_decision` Source artifact SHA-256: `d02d91cdde41cb76ec5c86b532dffc564879c69e764a8c6b7752460fbbfd24b7` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Url https://pmc.ncbi.nlm.nih.gov/articles/PMC11785235/ Source metadata	Ensemble docking for intrinsically disordered proteins Original source ↗ No field-specific location recorded Version: preprint archived 2025-01-26 Retrieved: 2026-09-16T10:33:56.275Z	catalogued No individual claim review recorded Audit details Field: `attributes.url` Source artifact SHA-256: `d02d91cdde41cb76ec5c86b532dffc564879c69e764a8c6b7752460fbbfd24b7` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Version preprint archived 2025-01-26 Source metadata	Ensemble docking for intrinsically disordered proteins Original source ↗ No field-specific location recorded Version: preprint archived 2025-01-26 Retrieved: 2026-09-16T10:33:56.275Z	catalogued No individual claim review recorded Audit details Field: `attributes.version` Source artifact SHA-256: `d02d91cdde41cb76ec5c86b532dffc564879c69e764a8c6b7752460fbbfd24b7` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

How to read the evidence

Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: discovered

Primary paper retained with its original identifier. Metadata inherited from the literature collection; individual result checks are separate.

Release history

No supporting source is linked yet.

Read original source

Download this release (gzip)

Technical metadata and extraction receipts

Stable ID: ensemble-idp-docking-2025

areas: molecular-interactions
url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11785235/
version: preprint archived 2025-01-26
retrieved at: 2026-09-15T23:29:32Z
doi: 10.1101/2025.01.23.634614
publication status: preprint
year: 2025
artifact sha256: d02d91cdde41cb76ec5c86b532dffc564879c69e764a8c6b7752460fbbfd24b7
artifact url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC11785235/fullTextXML
artifact retrieved at: 2026-09-16T10:33:56.275Z
scope decision: included
missing metadata: licence: reason: unextracted

Related records

Suggest a correction