Success rate (best-matched RMSD under 3 å per docked frame) of AutoDock Vina holo on α-synuclein Ligand 47 MD ensemble
28% Success rate (best-matched RMSD under 3 å per docked frame)
Methods
- Tested configuration
- AutoDock Vina holo
- Task
- Intrinsically disordered protein ensemble docking
- Dataset
- α-synuclein Ligand 47 MD ensemble
- Procedure
- Fraction of docked frames within 3 Å of MD-observed bound pose; holo protein ensemble.
- Evaluation
- AutoDock Vina holo: Intrinsically disordered protein ensemble docking
- Coverage
- Not reported scored / Not reported eligible
- Uncertainty
- Not yet extracted
- Evidence
- Independent external evaluation · source checkedEnsemble docking for intrinsically disordered proteins · Table 2, Ligand 47 row, AutoDock Vina Holo Docking column
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Reproduction
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- Not reported
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Printed value 27.96 Individual claims | Ensemble docking for intrinsically disordered proteins Table 2, Ligand 47 row, AutoDock Vina Holo Docking column Version: preprint archived 2025-01-26 | source checked ["independent-cell-check"] · 2026-09-16T10:33:56.275Z independent paper Audit detailsExact row/header labels and numeric cell matched. Check verifies transcription, not experimental correctness. Field: Claim: claim-lit-b3-046 Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record Extraction artifact SHA-256: |
Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
1 source record and release history
- Ensemble docking for intrinsically disordered proteins · Original source · preprint archived 2025-01-26
Technical metadata and extraction receipts
Stable ID: lit-b3-046
- areas
- molecular-interactions
- tasks
- Intrinsically disordered protein ensemble docking
- printed value
- 27.96
- numeric value
- 27.96
- metric
- success-rate
- metric direction
- unknown
- unit
- percent
- source locator
- Table 2, Ligand 47 row, AutoDock Vina Holo Docking column
- review
- method: independent-cell-check; reviewer: rewire-deterministic-table-checker; reviewed at: 2026-09-16T10:33:56.275Z; evidence: Table 2, Ligand 47 row, AutoDock Vina Holo Docking column; cell: 27.96 (98.30); artifact sha256: d02d91cdde41cb76ec5c86b532dffc564879c69e764a8c6b7752460fbbfd24b7; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC11785235/fullTextXML; method note: primary XML source; exact label and cell match; reviewer note: version v1; note: Exact row/header labels and numeric cell matched. Check verifies transcription, not experimental correctness.
- legacy id
- lit-b3-046
- missing metadata
- dataset version: reason: unextracted; model version: reason: unextracted; split: reason: unextracted; uncertainty: reason: unextracted
- metric qualifier
- best-matched rmsd under 3 å per docked frame