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Diagnostic Accuracy of Shotgun Metagenomics for Bloodstream Infections Is Influenced by Bioinformatics Workflow Selection

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Table 1 prints Kraken relative abundances of 5.17E‐10 (Salmonella enterica and Escherichia coli), 5.17E‐11 (Lactobacillus fermentum) and 5.17E‐12 (Enterococcus faecalis): one mantissa over three orders of magnitude. As read fractions these need at least about 2 billion to 190 billion reads per assigned read, far above the study's libraries (patient samples average 33.5 M reads after QC; the control library size is not given). The values are probably a computation or formatting artefact, so the Kraken column of Table 1 and its eta squared (3.20E‐2) should not be compared. Values are kept as printed. Table 2 values are not affected by this finding.Diagnostic Accuracy of Shotgun Metagenomics for Bloodstream Infections Is Influenced by Bioinformatics Workflow Selection · Table 1, column 'Kraken', rows 'Salmonella enterica' to 'Enterococcus faecalis' and 'η 2'; Methods 'Sample Collection and Processing'

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21 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-09-8cc1db47c7f9
Property and statement	Original source and location	Review and provenance
attributes.artifact_sha256 7b122b551b2155b43c26f5a15e7382a0662d859520d2939dc91e04d88e5656ef Source metadata	Diagnostic Accuracy of Shotgun Metagenomics for Bloodstream Infections Is Influenced by Bioinformatics Workflow Selection Original source ↗ No field-specific location recorded Version: MicrobiologyOpen 14(6):e70158, published online 2025-12-15; PMC12705909 full-text XML Retrieved: 2026-10-09T19:48:48Z	catalogued No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.artifact_sha256` Source artifact SHA-256: `7b122b551b2155b43c26f5a15e7382a0662d859520d2939dc91e04d88e5656ef` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.artifact_url https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12705909/fullTextXML Source metadata	Diagnostic Accuracy of Shotgun Metagenomics for Bloodstream Infections Is Influenced by Bioinformatics Workflow Selection Original source ↗ No field-specific location recorded Version: MicrobiologyOpen 14(6):e70158, published online 2025-12-15; PMC12705909 full-text XML Retrieved: 2026-10-09T19:48:48Z	catalogued No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.artifact_url` Source artifact SHA-256: `7b122b551b2155b43c26f5a15e7382a0662d859520d2939dc91e04d88e5656ef` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.doi 10.1002/mbo3.70158 Source metadata	Diagnostic Accuracy of Shotgun Metagenomics for Bloodstream Infections Is Influenced by Bioinformatics Workflow Selection Original source ↗ No field-specific location recorded Version: MicrobiologyOpen 14(6):e70158, published online 2025-12-15; PMC12705909 full-text XML Retrieved: 2026-10-09T19:48:48Z	catalogued No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.doi` Source artifact SHA-256: `7b122b551b2155b43c26f5a15e7382a0662d859520d2939dc91e04d88e5656ef` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.evidence_concerns 1 values source id dna-pathogen-20261009-source-song2025 message Table 1 prints Kraken relative abundances of 5.17E‐10 (Salmonella enterica and Escherichia coli), 5.17E‐11 (Lactobacillus fermentum) and 5.17E‐12 (Enterococcus faecalis): one mantissa over three orders of magnitude. As read fractions these need at least about 2 billion to 190 billion reads per assigned read, far above the study's libraries (patient samples average 33.5 M reads after QC; the control library size is not given). The values are probably a computation or formatting artefact, so the Kraken column of Table 1 and its eta squared (3.20E‐2) should not be compared. Values are kept as printed. Table 2 values are not affected by this finding. source locator Table 1, column 'Kraken', rows 'Salmonella enterica' to 'Enterococcus faecalis' and 'η 2'; Methods 'Sample Collection and Processing' artifact sha256 7b122b551b2155b43c26f5a15e7382a0662d859520d2939dc91e04d88e5656ef reviewed at 2026-10-09T20:14:38Z review method ai-assisted-source-review Source metadata	Diagnostic Accuracy of Shotgun Metagenomics for Bloodstream Infections Is Influenced by Bioinformatics Workflow Selection Original source ↗ No field-specific location recorded Version: MicrobiologyOpen 14(6):e70158, published online 2025-12-15; PMC12705909 full-text XML Retrieved: 2026-10-09T19:48:48Z	catalogued No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.evidence_concerns` Source artifact SHA-256: `7b122b551b2155b43c26f5a15e7382a0662d859520d2939dc91e04d88e5656ef` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.licence CC-BY-4.0 Source metadata	Diagnostic Accuracy of Shotgun Metagenomics for Bloodstream Infections Is Influenced by Bioinformatics Workflow Selection Original source ↗ No field-specific location recorded Version: MicrobiologyOpen 14(6):e70158, published online 2025-12-15; PMC12705909 full-text XML Retrieved: 2026-10-09T19:48:48Z	catalogued No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.licence` Source artifact SHA-256: `7b122b551b2155b43c26f5a15e7382a0662d859520d2939dc91e04d88e5656ef` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.media_type application/xml Source metadata	Diagnostic Accuracy of Shotgun Metagenomics for Bloodstream Infections Is Influenced by Bioinformatics Workflow Selection Original source ↗ No field-specific location recorded Version: MicrobiologyOpen 14(6):e70158, published online 2025-12-15; PMC12705909 full-text XML Retrieved: 2026-10-09T19:48:48Z	catalogued No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.media_type` Source artifact SHA-256: `7b122b551b2155b43c26f5a15e7382a0662d859520d2939dc91e04d88e5656ef` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.publication_status peer_reviewed Source metadata	Diagnostic Accuracy of Shotgun Metagenomics for Bloodstream Infections Is Influenced by Bioinformatics Workflow Selection Original source ↗ No field-specific location recorded Version: MicrobiologyOpen 14(6):e70158, published online 2025-12-15; PMC12705909 full-text XML Retrieved: 2026-10-09T19:48:48Z	catalogued No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.publication_status` Source artifact SHA-256: `7b122b551b2155b43c26f5a15e7382a0662d859520d2939dc91e04d88e5656ef` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.retrieved_at 2026-10-09T19:48:48Z Source metadata	Diagnostic Accuracy of Shotgun Metagenomics for Bloodstream Infections Is Influenced by Bioinformatics Workflow Selection Original source ↗ No field-specific location recorded Version: MicrobiologyOpen 14(6):e70158, published online 2025-12-15; PMC12705909 full-text XML Retrieved: 2026-10-09T19:48:48Z	catalogued No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.retrieved_at` Source artifact SHA-256: `7b122b551b2155b43c26f5a15e7382a0662d859520d2939dc91e04d88e5656ef` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.source_locator Licence statement in the article XML <license> element: Creative Commons Attribution 4.0 Source metadata	Diagnostic Accuracy of Shotgun Metagenomics for Bloodstream Infections Is Influenced by Bioinformatics Workflow Selection Original source ↗ No field-specific location recorded Version: MicrobiologyOpen 14(6):e70158, published online 2025-12-15; PMC12705909 full-text XML Retrieved: 2026-10-09T19:48:48Z	catalogued No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.source_locator` Source artifact SHA-256: `7b122b551b2155b43c26f5a15e7382a0662d859520d2939dc91e04d88e5656ef` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.url https://doi.org/10.1002/mbo3.70158 Source metadata	Diagnostic Accuracy of Shotgun Metagenomics for Bloodstream Infections Is Influenced by Bioinformatics Workflow Selection Original source ↗ No field-specific location recorded Version: MicrobiologyOpen 14(6):e70158, published online 2025-12-15; PMC12705909 full-text XML Retrieved: 2026-10-09T19:48:48Z	catalogued No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.url` Source artifact SHA-256: `7b122b551b2155b43c26f5a15e7382a0662d859520d2939dc91e04d88e5656ef` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Stable ID: dna-pathogen-20261009-source-song2025

areas: microbes-communities
contexts: clinical_research
url: https://doi.org/10.1002/mbo3.70158
artifact url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12705909/fullTextXML
version: MicrobiologyOpen 14(6):e70158, published online 2025-12-15; PMC12705909 full-text XML
retrieved at: 2026-10-09T19:48:48Z
artifact sha256: 7b122b551b2155b43c26f5a15e7382a0662d859520d2939dc91e04d88e5656ef
doi: 10.1002/mbo3.70158
publication status: peer_reviewed
licence: CC-BY-4.0
media type: application/xml
venue: MicrobiologyOpen
year: 2025
source locator: Licence statement in the article XML <license> element: Creative Commons Attribution 4.0
evidence concerns: source id: dna-pathogen-20261009-source-song2025; message: Table 1 prints Kraken relative abundances of 5.17E‐10 (Salmonella enterica and Escherichia coli), 5.17E‐11 (Lactobacillus fermentum) and 5.17E‐12 (Enterococcus faecalis): one mantissa over three orders of magnitude. As read fractions these need at least about 2 billion to 190 billion reads per assigned read, far above the study's libraries (patient samples average 33.5 M reads after QC; the control library size is not given). The values are probably a computation or formatting artefact, so the Kraken column of Table 1 and its eta squared (3.20E‐2) should not be compared. Values are kept as printed. Table 2 values are not affected by this finding.; source locator: Table 1, column 'Kraken', rows 'Salmonella enterica' to 'Enterococcus faecalis' and 'η 2'; Methods 'Sample Collection and Processing'; artifact sha256: 7b122b551b2155b43c26f5a15e7382a0662d859520d2939dc91e04d88e5656ef; reviewed at: 2026-10-09T20:14:38Z; review method: ai-assisted-source-review

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