SegmentNT supplementary information: complete Tables 2 and 3
Nature Methods · Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot
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Results
Values as the source printed them. Compare results only under compatible protocols, datasets and metrics.
Claims
Statements this source supports, each with where in the source it was checked.
- SegmentNT human genome annotation 3UTR auPRC: part of segmentnt-human-genome-annotation-2025: Part of SegmentNT human genome annotation (Supplementary Table 3, 3UTR column; primary article Sec16–17)
- SegmentNT human genome annotation 3UTR MCC: part of segmentnt-human-genome-annotation-2025: Part of SegmentNT human genome annotation (Supplementary Table 2, 3UTR column; primary article Sec16–17)
- SegmentNT human genome annotation 5UTR auPRC: part of segmentnt-human-genome-annotation-2025: Part of SegmentNT human genome annotation (Supplementary Table 3, 5UTR column; primary article Sec16–17)
- SegmentNT human genome annotation 5UTR MCC: part of segmentnt-human-genome-annotation-2025: Part of SegmentNT human genome annotation (Supplementary Table 2, 5UTR column; primary article Sec16–17)
- SegmentNT human genome annotation CTCF-bound auPRC: part of segmentnt-human-genome-annotation-2025: Part of SegmentNT human genome annotation (Supplementary Table 3, CTCF-bound column; primary article Sec16–17)
- SegmentNT human genome annotation CTCF-bound MCC: part of segmentnt-human-genome-annotation-2025: Part of SegmentNT human genome annotation (Supplementary Table 2, CTCF-bound column; primary article Sec16–17)
- SegmentNT human genome annotation enhancer tissue-invariant auPRC: part of segmentnt-human-genome-annotation-2025: Part of SegmentNT human genome annotation (Supplementary Table 3, enhancer tissue-invariant column; primary article Sec16–17)
- SegmentNT human genome annotation enhancer tissue-invariant MCC: part of segmentnt-human-genome-annotation-2025: Part of SegmentNT human genome annotation (Supplementary Table 2, enhancer tissue-invariant column; primary article Sec16–17)
- SegmentNT human genome annotation enhancer tissue-specific auPRC: part of segmentnt-human-genome-annotation-2025: Part of SegmentNT human genome annotation (Supplementary Table 3, enhancer tissue-specific column; primary article Sec16–17)
- SegmentNT human genome annotation enhancer tissue-specific MCC: part of segmentnt-human-genome-annotation-2025: Part of SegmentNT human genome annotation (Supplementary Table 2, enhancer tissue-specific column; primary article Sec16–17)
- SegmentNT human genome annotation exon auPRC: part of segmentnt-human-genome-annotation-2025: Part of SegmentNT human genome annotation (Supplementary Table 3, exon column; primary article Sec16–17)
- SegmentNT human genome annotation exon MCC: part of segmentnt-human-genome-annotation-2025: Part of SegmentNT human genome annotation (Supplementary Table 2, exon column; primary article Sec16–17)
- SegmentNT human genome annotation intron auPRC: part of segmentnt-human-genome-annotation-2025: Part of SegmentNT human genome annotation (Supplementary Table 3, intron column; primary article Sec16–17)
- SegmentNT human genome annotation intron MCC: part of segmentnt-human-genome-annotation-2025: Part of SegmentNT human genome annotation (Supplementary Table 2, intron column; primary article Sec16–17)
- SegmentNT human genome annotation lncRNA auPRC: part of segmentnt-human-genome-annotation-2025: Part of SegmentNT human genome annotation (Supplementary Table 3, lncRNA column; primary article Sec16–17)
- SegmentNT human genome annotation lncRNA MCC: part of segmentnt-human-genome-annotation-2025: Part of SegmentNT human genome annotation (Supplementary Table 2, lncRNA column; primary article Sec16–17)
- SegmentNT human genome annotation polyA signal auPRC: part of segmentnt-human-genome-annotation-2025: Part of SegmentNT human genome annotation (Supplementary Table 3, polyA signal column; primary article Sec16–17)
- SegmentNT human genome annotation polyA signal MCC: part of segmentnt-human-genome-annotation-2025: Part of SegmentNT human genome annotation (Supplementary Table 2, polyA signal column; primary article Sec16–17)
- SegmentNT human genome annotation promoter tissue-invariant auPRC: part of segmentnt-human-genome-annotation-2025: Part of SegmentNT human genome annotation (Supplementary Table 3, promoter tissue-invariant column; primary article Sec16–17)
- SegmentNT human genome annotation promoter tissue-invariant MCC: part of segmentnt-human-genome-annotation-2025: Part of SegmentNT human genome annotation (Supplementary Table 2, promoter tissue-invariant column; primary article Sec16–17)
- SegmentNT human genome annotation promoter tissue-specific auPRC: part of segmentnt-human-genome-annotation-2025: Part of SegmentNT human genome annotation (Supplementary Table 3, promoter tissue-specific column; primary article Sec16–17)
- SegmentNT human genome annotation promoter tissue-specific MCC: part of segmentnt-human-genome-annotation-2025: Part of SegmentNT human genome annotation (Supplementary Table 2, promoter tissue-specific column; primary article Sec16–17)
- SegmentNT human genome annotation protein coding gene auPRC: part of segmentnt-human-genome-annotation-2025: Part of SegmentNT human genome annotation (Supplementary Table 3, protein coding gene column; primary article Sec16–17)
- SegmentNT human genome annotation protein coding gene MCC: part of segmentnt-human-genome-annotation-2025: Part of SegmentNT human genome annotation (Supplementary Table 2, protein coding gene column; primary article Sec16–17)
- SegmentNT human genome annotation splice acceptor auPRC: part of segmentnt-human-genome-annotation-2025: Part of SegmentNT human genome annotation (Supplementary Table 3, splice acceptor column; primary article Sec16–17)
Models, benchmarks and other records
Configurations (21)
- BPNet arch.
- BPNet arch. large
- Random-Init
- Random-Init (only head)
- SegmentBorzoi-30kb
- SegmentBorzoi-524kb
- SegmentEnformer-30kb
- SegmentEnformer-196kb
- SegmentNT-3kb
- SegmentNT-3kb (NTv1 human; 2.5B)
- SegmentNT-3kb (only head)
- SegmentNT-3kb-single-task (x14)
- SegmentNT-10kb
- SegmentNT-20kb
- SegmentNT-30kb
- SpliceAI arch.
- SpliceAI arch. extra-large
- SpliceAI arch. large
- UNet
- UNet 1024-embedding
- UNet large
Benchmarks (1)
Protocols (28)
- SegmentNT human genome annotation 3UTR auPRC: 3UTR: per-nucleotide annotation (auPRC)
- SegmentNT human genome annotation 3UTR MCC: 3UTR: per-nucleotide annotation (MCC)
- SegmentNT human genome annotation 5UTR auPRC: 5UTR: per-nucleotide annotation (auPRC)
- SegmentNT human genome annotation 5UTR MCC: 5UTR: per-nucleotide annotation (MCC)
- SegmentNT human genome annotation CTCF-bound auPRC: CTCF-bound: per-nucleotide annotation (auPRC)
- SegmentNT human genome annotation CTCF-bound MCC: CTCF-bound: per-nucleotide annotation (MCC)
- SegmentNT human genome annotation enhancer tissue-invariant auPRC: enhancer tissue-invariant: per-nucleotide annotation (auPRC)
- SegmentNT human genome annotation enhancer tissue-invariant MCC: enhancer tissue-invariant: per-nucleotide annotation (MCC)
- SegmentNT human genome annotation enhancer tissue-specific auPRC: enhancer tissue-specific: per-nucleotide annotation (auPRC)
- SegmentNT human genome annotation enhancer tissue-specific MCC: enhancer tissue-specific: per-nucleotide annotation (MCC)
- SegmentNT human genome annotation exon auPRC: exon: per-nucleotide annotation (auPRC)
- SegmentNT human genome annotation exon MCC: exon: per-nucleotide annotation (MCC)
- SegmentNT human genome annotation intron auPRC: intron: per-nucleotide annotation (auPRC)
- SegmentNT human genome annotation intron MCC: intron: per-nucleotide annotation (MCC)
- SegmentNT human genome annotation lncRNA auPRC: lncRNA: per-nucleotide annotation (auPRC)
- SegmentNT human genome annotation lncRNA MCC: lncRNA: per-nucleotide annotation (MCC)
- SegmentNT human genome annotation polyA signal auPRC: polyA signal: per-nucleotide annotation (auPRC)
- SegmentNT human genome annotation polyA signal MCC: polyA signal: per-nucleotide annotation (MCC)
- SegmentNT human genome annotation promoter tissue-invariant auPRC: promoter tissue-invariant: per-nucleotide annotation (auPRC)
- SegmentNT human genome annotation promoter tissue-invariant MCC: promoter tissue-invariant: per-nucleotide annotation (MCC)
- SegmentNT human genome annotation promoter tissue-specific auPRC: promoter tissue-specific: per-nucleotide annotation (auPRC)
- SegmentNT human genome annotation promoter tissue-specific MCC: promoter tissue-specific: per-nucleotide annotation (MCC)
- SegmentNT human genome annotation protein coding gene auPRC: protein coding gene: per-nucleotide annotation (auPRC)
- SegmentNT human genome annotation protein coding gene MCC: protein coding gene: per-nucleotide annotation (MCC)
- SegmentNT human genome annotation splice acceptor auPRC: splice acceptor: per-nucleotide annotation (auPRC)
Dataset subsets (14)
- Human genome 3UTR test chromosomes 20 and 21 (SegmentNT human genome annotation split)
- Human genome 5UTR test chromosomes 20 and 21 (SegmentNT human genome annotation split)
- Human genome CTCF-bound test chromosomes 20 and 21 (SegmentNT human genome annotation split)
- Human genome enhancer tissue-invariant test chromosomes 20 and 21 (SegmentNT human genome annotation split)
- Human genome enhancer tissue-specific test chromosomes 20 and 21 (SegmentNT human genome annotation split)
- Human genome exon test chromosomes 20 and 21 (SegmentNT human genome annotation split)
- Human genome intron test chromosomes 20 and 21 (SegmentNT human genome annotation split)
- Human genome lncRNA test chromosomes 20 and 21 (SegmentNT human genome annotation split)
- Human genome polyA signal test chromosomes 20 and 21 (SegmentNT human genome annotation split)
- Human genome promoter tissue-invariant test chromosomes 20 and 21 (SegmentNT human genome annotation split)
- Human genome promoter tissue-specific test chromosomes 20 and 21 (SegmentNT human genome annotation split)
- Human genome protein coding gene test chromosomes 20 and 21 (SegmentNT human genome annotation split)
- Human genome splice acceptor test chromosomes 20 and 21 (SegmentNT human genome annotation split)
- Human genome splice donor test chromosomes 20 and 21 (SegmentNT human genome annotation split)
Evaluations (588)
- BPNet arch. large on SegmentNT human genome annotation 3UTR auPRC: 3UTR: per-nucleotide annotation (auPRC)
- BPNet arch. large on SegmentNT human genome annotation 3UTR MCC: 3UTR: per-nucleotide annotation (MCC)
- BPNet arch. large on SegmentNT human genome annotation 5UTR auPRC: 5UTR: per-nucleotide annotation (auPRC)
- BPNet arch. large on SegmentNT human genome annotation 5UTR MCC: 5UTR: per-nucleotide annotation (MCC)
- BPNet arch. large on SegmentNT human genome annotation CTCF-bound auPRC: CTCF-bound: per-nucleotide annotation (auPRC)
- BPNet arch. large on SegmentNT human genome annotation CTCF-bound MCC: CTCF-bound: per-nucleotide annotation (MCC)
- BPNet arch. large on SegmentNT human genome annotation enhancer tissue-invariant auPRC: enhancer tissue-invariant: per-nucleotide annotation (auPRC)
- BPNet arch. large on SegmentNT human genome annotation enhancer tissue-invariant MCC: enhancer tissue-invariant: per-nucleotide annotation (MCC)
- BPNet arch. large on SegmentNT human genome annotation enhancer tissue-specific auPRC: enhancer tissue-specific: per-nucleotide annotation (auPRC)
- BPNet arch. large on SegmentNT human genome annotation enhancer tissue-specific MCC: enhancer tissue-specific: per-nucleotide annotation (MCC)
- BPNet arch. large on SegmentNT human genome annotation exon auPRC: exon: per-nucleotide annotation (auPRC)
- BPNet arch. large on SegmentNT human genome annotation exon MCC: exon: per-nucleotide annotation (MCC)
- BPNet arch. large on SegmentNT human genome annotation intron auPRC: intron: per-nucleotide annotation (auPRC)
- BPNet arch. large on SegmentNT human genome annotation intron MCC: intron: per-nucleotide annotation (MCC)
- BPNet arch. large on SegmentNT human genome annotation lncRNA auPRC: lncRNA: per-nucleotide annotation (auPRC)
- BPNet arch. large on SegmentNT human genome annotation lncRNA MCC: lncRNA: per-nucleotide annotation (MCC)
- BPNet arch. large on SegmentNT human genome annotation polyA signal auPRC: polyA signal: per-nucleotide annotation (auPRC)
- BPNet arch. large on SegmentNT human genome annotation polyA signal MCC: polyA signal: per-nucleotide annotation (MCC)
- BPNet arch. large on SegmentNT human genome annotation promoter tissue-invariant auPRC: promoter tissue-invariant: per-nucleotide annotation (auPRC)
- BPNet arch. large on SegmentNT human genome annotation promoter tissue-invariant MCC: promoter tissue-invariant: per-nucleotide annotation (MCC)
- BPNet arch. large on SegmentNT human genome annotation promoter tissue-specific auPRC: promoter tissue-specific: per-nucleotide annotation (auPRC)
- BPNet arch. large on SegmentNT human genome annotation promoter tissue-specific MCC: promoter tissue-specific: per-nucleotide annotation (MCC)
- BPNet arch. large on SegmentNT human genome annotation protein coding gene auPRC: protein coding gene: per-nucleotide annotation (auPRC)
- BPNet arch. large on SegmentNT human genome annotation protein coding gene MCC: protein coding gene: per-nucleotide annotation (MCC)
- BPNet arch. large on SegmentNT human genome annotation splice acceptor auPRC: splice acceptor: per-nucleotide annotation (auPRC)
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
13 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Artifact SHA-256 c4ad23a62ab161a464fe789e5dd167cf2bfe9f43a91a9c3fb1261b99a5594b0f Source metadata | SegmentNT supplementary information: complete Tables 2 and 3 No field-specific location recorded Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Artifact url https://media.springernature.com/original/springer-static/esm/art%3A10.1038%2Fs41592-025-02881-2/MediaObjects/41592_2025_2881_MOESM1_ESM.pdf Source metadata | SegmentNT supplementary information: complete Tables 2 and 3 No field-specific location recorded Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Retrieved at 2026-09-23T11:23:43.985410+00:00 Source metadata | SegmentNT supplementary information: complete Tables 2 and 3 No field-specific location recorded Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Url https://doi.org/10.1038/s41592-025-02881-2 Source metadata | SegmentNT supplementary information: complete Tables 2 and 3 No field-specific location recorded Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Venue Nature Methods Source metadata | SegmentNT supplementary information: complete Tables 2 and 3 No field-specific location recorded Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Version Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot Source metadata | SegmentNT supplementary information: complete Tables 2 and 3 No field-specific location recorded Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description Pinned primary artifact. Review is limited to the cited rows. Source metadata | SegmentNT supplementary information: complete Tables 2 and 3 No field-specific location recorded Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Facets: areas1 values
| SegmentNT supplementary information: complete Tables 2 and 3 No field-specific location recorded Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Record ID coverage-segmentnt-2025-supplement Source metadata | SegmentNT supplementary information: complete Tables 2 and 3 No field-specific location recorded Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Record type source Source metadata | SegmentNT supplementary information: complete Tables 2 and 3 No field-specific location recorded Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
Pinned primary artifact. Review is limited to the cited rows.
Technical metadata and extraction receipts
Stable ID: coverage-segmentnt-2025-supplement
- areas
- dna-genomes
- url
- https://doi.org/10.1038/s41592-025-02881-2
- artifact url
- https://media.springernature.com/original/springer-static/esm/art%3A10.1038%2Fs41592-025-02881-2/MediaObjects/41592_2025_2881_MOESM1_ESM.pdf
- artifact sha256
- c4ad23a62ab161a464fe789e5dd167cf2bfe9f43a91a9c3fb1261b99a5594b0f
- retrieved at
- 2026-09-23T11:23:43.985410+00:00
- venue
- Nature Methods
- version
- Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot