rewirebio.iobenchmarks
Source

SegmentNT supplementary information: complete Tables 2 and 3

Nature Methods · Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot

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What this source contributed

Records in this release that cite this source. A record can cite several sources.

Results

Values as the source printed them. Compare results only under compatible protocols, datasets and metrics.

Model or configurationMetricValueDatasetEvaluation
BPNet arch. largeAUPRC0.07 (± 0.002) unitlessHuman genome 3UTR test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation 3UTR auPRC: 3UTR: per-nucleotide annotation (auPRC)
BPNet arch. largeMCC0.10 (± 0.004) unitlessHuman genome 3UTR test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation 3UTR MCC: 3UTR: per-nucleotide annotation (MCC)
BPNet arch. largeAUPRC0.21 (± 0.003) unitlessHuman genome 5UTR test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation 5UTR auPRC: 5UTR: per-nucleotide annotation (auPRC)
BPNet arch. largeMCC0.26 (± 0.004) unitlessHuman genome 5UTR test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation 5UTR MCC: 5UTR: per-nucleotide annotation (MCC)
BPNet arch. largeAUPRC0.06 (± 0.001) unitlessHuman genome CTCF-bound test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation CTCF-bound auPRC: CTCF-bound: per-nucleotide annotation (auPRC)
BPNet arch. largeMCC0.06 (± 0.003) unitlessHuman genome CTCF-bound test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation CTCF-bound MCC: CTCF-bound: per-nucleotide annotation (MCC)
BPNet arch. largeAUPRC0.11 (± 0.002) unitlessHuman genome enhancer tissue-invariant test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation enhancer tissue-invariant auPRC: enhancer tissue-invariant: per-nucleotide annotation (auPRC)
BPNet arch. largeMCC0.12 (± 0.003) unitlessHuman genome enhancer tissue-invariant test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation enhancer tissue-invariant MCC: enhancer tissue-invariant: per-nucleotide annotation (MCC)
BPNet arch. largeAUPRC0.30 (± 0.000) unitlessHuman genome enhancer tissue-specific test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation enhancer tissue-specific auPRC: enhancer tissue-specific: per-nucleotide annotation (auPRC)
BPNet arch. largeMCC0.20 (± 0.001) unitlessHuman genome enhancer tissue-specific test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation enhancer tissue-specific MCC: enhancer tissue-specific: per-nucleotide annotation (MCC)
BPNet arch. largeAUPRC0.26 (± 0.001) unitlessHuman genome exon test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation exon auPRC: exon: per-nucleotide annotation (auPRC)
BPNet arch. largeMCC0.27 (± 0.001) unitlessHuman genome exon test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation exon MCC: exon: per-nucleotide annotation (MCC)
BPNet arch. largeAUPRC0.62 (± 0.001) unitlessHuman genome intron test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation intron auPRC: intron: per-nucleotide annotation (auPRC)
BPNet arch. largeMCC0.21 (± 0.001) unitlessHuman genome intron test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation intron MCC: intron: per-nucleotide annotation (MCC)
BPNet arch. largeAUPRC0.21 (± 0.001) unitlessHuman genome lncRNA test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation lncRNA auPRC: lncRNA: per-nucleotide annotation (auPRC)
BPNet arch. largeMCC0.00 (± 0.000) unitlessHuman genome lncRNA test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation lncRNA MCC: lncRNA: per-nucleotide annotation (MCC)
BPNet arch. largeAUPRC0.03 (± 0.001) unitlessHuman genome polyA signal test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation polyA signal auPRC: polyA signal: per-nucleotide annotation (auPRC)
BPNet arch. largeMCC0.04 (± 0.005) unitlessHuman genome polyA signal test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation polyA signal MCC: polyA signal: per-nucleotide annotation (MCC)
BPNet arch. largeAUPRC0.45 (± 0.007) unitlessHuman genome promoter tissue-invariant test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation promoter tissue-invariant auPRC: promoter tissue-invariant: per-nucleotide annotation (auPRC)
BPNet arch. largeMCC0.40 (± 0.005) unitlessHuman genome promoter tissue-invariant test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation promoter tissue-invariant MCC: promoter tissue-invariant: per-nucleotide annotation (MCC)
BPNet arch. largeAUPRC0.12 (± 0.004) unitlessHuman genome promoter tissue-specific test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation promoter tissue-specific auPRC: promoter tissue-specific: per-nucleotide annotation (auPRC)
BPNet arch. largeMCC0.06 (± 0.004) unitlessHuman genome promoter tissue-specific test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation promoter tissue-specific MCC: promoter tissue-specific: per-nucleotide annotation (MCC)
BPNet arch. largeAUPRC0.57 (± 0.001) unitlessHuman genome protein coding gene test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation protein coding gene auPRC: protein coding gene: per-nucleotide annotation (auPRC)
BPNet arch. largeMCC0.29 (± 0.001) unitlessHuman genome protein coding gene test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation protein coding gene MCC: protein coding gene: per-nucleotide annotation (MCC)
BPNet arch. largeAUPRC0.21 (± 0.001) unitlessHuman genome splice acceptor test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation splice acceptor auPRC: splice acceptor: per-nucleotide annotation (auPRC)
BPNet arch. largeMCC0.22 (± 0.003) unitlessHuman genome splice acceptor test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation splice acceptor MCC: splice acceptor: per-nucleotide annotation (MCC)
BPNet arch. largeAUPRC0.28 (± 0.001) unitlessHuman genome splice donor test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation splice donor auPRC: splice donor: per-nucleotide annotation (auPRC)
BPNet arch. largeMCC0.29 (± 0.002) unitlessHuman genome splice donor test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. large on SegmentNT human genome annotation splice donor MCC: splice donor: per-nucleotide annotation (MCC)
BPNet arch.AUPRC0.06 (± 0.002) unitlessHuman genome 3UTR test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. on SegmentNT human genome annotation 3UTR auPRC: 3UTR: per-nucleotide annotation (auPRC)
BPNet arch.MCC0.00 (± 0.002) unitlessHuman genome 3UTR test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. on SegmentNT human genome annotation 3UTR MCC: 3UTR: per-nucleotide annotation (MCC)
BPNet arch.AUPRC0.15 (± 0.002) unitlessHuman genome 5UTR test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. on SegmentNT human genome annotation 5UTR auPRC: 5UTR: per-nucleotide annotation (auPRC)
BPNet arch.MCC0.17 (± 0.003) unitlessHuman genome 5UTR test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. on SegmentNT human genome annotation 5UTR MCC: 5UTR: per-nucleotide annotation (MCC)
BPNet arch.AUPRC0.01 (± 0.000) unitlessHuman genome CTCF-bound test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. on SegmentNT human genome annotation CTCF-bound auPRC: CTCF-bound: per-nucleotide annotation (auPRC)
BPNet arch.MCC0.00 (± 0.000) unitlessHuman genome CTCF-bound test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. on SegmentNT human genome annotation CTCF-bound MCC: CTCF-bound: per-nucleotide annotation (MCC)
BPNet arch.AUPRC0.04 (± 0.001) unitlessHuman genome enhancer tissue-invariant test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. on SegmentNT human genome annotation enhancer tissue-invariant auPRC: enhancer tissue-invariant: per-nucleotide annotation (auPRC)
BPNet arch.MCC0.00 (± 0.000) unitlessHuman genome enhancer tissue-invariant test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. on SegmentNT human genome annotation enhancer tissue-invariant MCC: enhancer tissue-invariant: per-nucleotide annotation (MCC)
BPNet arch.AUPRC0.23 (± 0.001) unitlessHuman genome enhancer tissue-specific test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. on SegmentNT human genome annotation enhancer tissue-specific auPRC: enhancer tissue-specific: per-nucleotide annotation (auPRC)
BPNet arch.MCC0.04 (± 0.001) unitlessHuman genome enhancer tissue-specific test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. on SegmentNT human genome annotation enhancer tissue-specific MCC: enhancer tissue-specific: per-nucleotide annotation (MCC)
BPNet arch.AUPRC0.24 (± 0.002) unitlessHuman genome exon test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. on SegmentNT human genome annotation exon auPRC: exon: per-nucleotide annotation (auPRC)
BPNet arch.MCC0.24 (± 0.002) unitlessHuman genome exon test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. on SegmentNT human genome annotation exon MCC: exon: per-nucleotide annotation (MCC)
BPNet arch.AUPRC0.62 (± 0.001) unitlessHuman genome intron test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. on SegmentNT human genome annotation intron auPRC: intron: per-nucleotide annotation (auPRC)
BPNet arch.MCC0.22 (± 0.001) unitlessHuman genome intron test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. on SegmentNT human genome annotation intron MCC: intron: per-nucleotide annotation (MCC)
BPNet arch.AUPRC0.22 (± 0.001) unitlessHuman genome lncRNA test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. on SegmentNT human genome annotation lncRNA auPRC: lncRNA: per-nucleotide annotation (auPRC)
BPNet arch.MCC0.00 (± 0.000) unitlessHuman genome lncRNA test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. on SegmentNT human genome annotation lncRNA MCC: lncRNA: per-nucleotide annotation (MCC)
BPNet arch.AUPRC0.00 (± 0.000) unitlessHuman genome polyA signal test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. on SegmentNT human genome annotation polyA signal auPRC: polyA signal: per-nucleotide annotation (auPRC)
BPNet arch.MCC0.00 (± 0.000) unitlessHuman genome polyA signal test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. on SegmentNT human genome annotation polyA signal MCC: polyA signal: per-nucleotide annotation (MCC)
BPNet arch.AUPRC0.29 (± 0.006) unitlessHuman genome promoter tissue-invariant test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. on SegmentNT human genome annotation promoter tissue-invariant auPRC: promoter tissue-invariant: per-nucleotide annotation (auPRC)
BPNet arch.MCC0.26 (± 0.005) unitlessHuman genome promoter tissue-invariant test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. on SegmentNT human genome annotation promoter tissue-invariant MCC: promoter tissue-invariant: per-nucleotide annotation (MCC)
BPNet arch.AUPRC0.10 (± 0.002) unitlessHuman genome promoter tissue-specific test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. on SegmentNT human genome annotation promoter tissue-specific auPRC: promoter tissue-specific: per-nucleotide annotation (auPRC)
BPNet arch.MCC0.05 (± 0.003) unitlessHuman genome promoter tissue-specific test chromosomes 20 and 21 (SegmentNT human genome annotation split)BPNet arch. on SegmentNT human genome annotation promoter tissue-specific MCC: promoter tissue-specific: per-nucleotide annotation (MCC)

Claims

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Models, benchmarks and other records

Configurations (21)

Benchmarks (1)

Protocols (28)

Dataset subsets (14)

Evaluations (588)

Evidence

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Evidence table

Inspect claims, sources and review details

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13 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statementOriginal source and locationReview and provenance
Artifact SHA-256
c4ad23a62ab161a464fe789e5dd167cf2bfe9f43a91a9c3fb1261b99a5594b0f
Source metadata
SegmentNT supplementary information: complete Tables 2 and 3

Original source ↗

No field-specific location recorded

Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot
Retrieved: 2026-09-23T11:23:43.985410+00:00

catalogued

No individual claim review recorded

Audit details

Field: attributes.artifact_sha256

Source artifact SHA-256: c4ad23a62ab161a464fe789e5dd167cf2bfe9f43a91a9c3fb1261b99a5594b0f

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Artifact url
https://media.springernature.com/original/springer-static/esm/art%3A10.1038%2Fs41592-025-02881-2/MediaObjects/41592_2025_2881_MOESM1_ESM.pdf
Source metadata
SegmentNT supplementary information: complete Tables 2 and 3

Original source ↗

No field-specific location recorded

Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot
Retrieved: 2026-09-23T11:23:43.985410+00:00

catalogued

No individual claim review recorded

Audit details

Field: attributes.artifact_url

Source artifact SHA-256: c4ad23a62ab161a464fe789e5dd167cf2bfe9f43a91a9c3fb1261b99a5594b0f

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Retrieved at
2026-09-23T11:23:43.985410+00:00
Source metadata
SegmentNT supplementary information: complete Tables 2 and 3

Original source ↗

No field-specific location recorded

Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot
Retrieved: 2026-09-23T11:23:43.985410+00:00

catalogued

No individual claim review recorded

Audit details

Field: attributes.retrieved_at

Source artifact SHA-256: c4ad23a62ab161a464fe789e5dd167cf2bfe9f43a91a9c3fb1261b99a5594b0f

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Url
https://doi.org/10.1038/s41592-025-02881-2
Source metadata
SegmentNT supplementary information: complete Tables 2 and 3

Original source ↗

No field-specific location recorded

Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot
Retrieved: 2026-09-23T11:23:43.985410+00:00

catalogued

No individual claim review recorded

Audit details

Field: attributes.url

Source artifact SHA-256: c4ad23a62ab161a464fe789e5dd167cf2bfe9f43a91a9c3fb1261b99a5594b0f

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Venue
Nature Methods
Source metadata
SegmentNT supplementary information: complete Tables 2 and 3

Original source ↗

No field-specific location recorded

Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot
Retrieved: 2026-09-23T11:23:43.985410+00:00

catalogued

No individual claim review recorded

Audit details

Field: attributes.venue

Source artifact SHA-256: c4ad23a62ab161a464fe789e5dd167cf2bfe9f43a91a9c3fb1261b99a5594b0f

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Version
Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot
Source metadata
SegmentNT supplementary information: complete Tables 2 and 3

Original source ↗

No field-specific location recorded

Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot
Retrieved: 2026-09-23T11:23:43.985410+00:00

catalogued

No individual claim review recorded

Audit details

Field: attributes.version

Source artifact SHA-256: c4ad23a62ab161a464fe789e5dd167cf2bfe9f43a91a9c3fb1261b99a5594b0f

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Description
Pinned primary artifact. Review is limited to the cited rows.
Source metadata
SegmentNT supplementary information: complete Tables 2 and 3

Original source ↗

No field-specific location recorded

Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot
Retrieved: 2026-09-23T11:23:43.985410+00:00

catalogued

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: c4ad23a62ab161a464fe789e5dd167cf2bfe9f43a91a9c3fb1261b99a5594b0f

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Facets: areas
1 values
  • dna-genomes
Source metadata
SegmentNT supplementary information: complete Tables 2 and 3

Original source ↗

No field-specific location recorded

Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot
Retrieved: 2026-09-23T11:23:43.985410+00:00

catalogued

No individual claim review recorded

Audit details

Field: facets.areas

Source artifact SHA-256: c4ad23a62ab161a464fe789e5dd167cf2bfe9f43a91a9c3fb1261b99a5594b0f

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Record ID
coverage-segmentnt-2025-supplement
Source metadata
SegmentNT supplementary information: complete Tables 2 and 3

Original source ↗

No field-specific location recorded

Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot
Retrieved: 2026-09-23T11:23:43.985410+00:00

catalogued

No individual claim review recorded

Audit details

Field: id

Source artifact SHA-256: c4ad23a62ab161a464fe789e5dd167cf2bfe9f43a91a9c3fb1261b99a5594b0f

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Record type
source
Source metadata
SegmentNT supplementary information: complete Tables 2 and 3

Original source ↗

No field-specific location recorded

Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot
Retrieved: 2026-09-23T11:23:43.985410+00:00

catalogued

No individual claim review recorded

Audit details

Field: kind

Source artifact SHA-256: c4ad23a62ab161a464fe789e5dd167cf2bfe9f43a91a9c3fb1261b99a5594b0f

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

How to read the evidence

Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

Pinned primary artifact. Review is limited to the cited rows.

Release history

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Technical metadata and extraction receipts

Stable ID: coverage-segmentnt-2025-supplement

areas
dna-genomes
url
https://doi.org/10.1038/s41592-025-02881-2
artifact url
https://media.springernature.com/original/springer-static/esm/art%3A10.1038%2Fs41592-025-02881-2/MediaObjects/41592_2025_2881_MOESM1_ESM.pdf
artifact sha256
c4ad23a62ab161a464fe789e5dd167cf2bfe9f43a91a9c3fb1261b99a5594b0f
retrieved at
2026-09-23T11:23:43.985410+00:00
venue
Nature Methods
version
Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot
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