Accuracy of Promotech on E. coli sigma70 promoter dataset
0.71 Accuracy
Methods
- Tested configuration
- Promotech
- Protocol
- E. coli sigma70 independent promoter test (E. coli sigma70 promoter prediction)
- Dataset
- E. coli sigma70 promoter dataset
- Procedure
- Test-only evaluation on Cassiano and Silva-Rocha 2020 data; methods have different training histories. 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training.
- Evaluation
- Promotech: E. coli sigma70 promoter prediction
- Coverage
- Not reported scored / Not reported eligible
- Uncertainty
- Not yet extracted
- Evidence
- Independent external evaluation · source checkedProkBERT family: genomic language models for microbiome applications; ProkBERT family: genomic language models for microbiome applications · Table 3, Promotech row, Accuracy column
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Reproduction
- Split
- 865 high-evidence RegulonDB 10.5 promoters and 1,000 nucleotide-distribution-matched negative sequences. Promoter exact matches removed from model training.
- Adaptation
- Paper-specific evaluated pipeline; exact checkpoint not inferred from label
- Scoring implementation
- Not reported
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Metric direction higher Individual claims | ProkBERT family: genomic language models for microbiome applications Table 3, row Promotech, column Accuracy; XML row13 column2 Version: PMC10810988.1 | source checked ["automated-source-review"] · 2026-09-17 independent paper Audit detailsField: Claim: paper-claim-2b3745079e2e48a79d Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Printed value 0.71 Individual claims | ProkBERT family: genomic language models for microbiome applications Table 3, Promotech row, Accuracy column Version: PMC10810988.1 | source checked ["independent-cell-check"] · 2026-09-16T10:33:36.197Z independent paper Audit detailsExact row/header labels and numeric cell matched. Check verifies transcription, not experimental correctness. Field: Claim: claim-lit-034 Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record Extraction artifact SHA-256: |
Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
2 source records and release history
- ProkBERT family: genomic language models for microbiome applications · Original source · PMC10810988.1
- ProkBERT family: genomic language models for microbiome applications · Original source · PMC10810988.1
Technical metadata and extraction receipts
Stable ID: lit-034
- areas
- microbes-communities
- tasks
- E. coli sigma70 promoter prediction
- printed value
- 0.71
- numeric value
- 0.71
- metric
- accuracy
- metric direction
- higher
- unit
- unitless
- source locator
- Table 3, Promotech row, Accuracy column
- review
- method: independent-cell-check; reviewer: rewire-deterministic-table-checker; reviewed at: 2026-09-16T10:33:36.197Z; evidence: Table 3, Promotech row, Accuracy column; cell: 0.71; artifact sha256: 8610e2a54aa877c8dc565a9cdb6e82099f284c5e0907a52cab18d994ea732436; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC10810988/fullTextXML; method note: primary XML source; exact label and cell match; reviewer note: version v1; note: Exact row/header labels and numeric cell matched. Check verifies transcription, not experimental correctness.
- legacy id
- lit-034
- missing metadata
- dataset version: reason: unextracted; model version: reason: unextracted; split: reason: unextracted; uncertainty: reason: unextracted