Result

0.799 AUROC

ESM2 · AUROC · FUJISAN test sub-dataset

Tested configuration: ESM2
Protocol: Enzyme-pair functional identity: original held-out test (Enzyme functional identity prediction)
Dataset: FUJISAN test sub-dataset
Procedure: LightGBM FUJISAN and comparison methods; predictions thresholded to maximizeF 1. Protein-pair splitting is not evidence of disjoint proteins or families. 41,600 protein pairs; balanced functional-identity classes; random 56.25/18.75/25% training/validation/test split.
Evaluation: ESM2: Enzyme functional identity prediction
Coverage: scored: unreported; eligible: unreported
Uncertainty: Not reported
Evidence: Independent external evaluation · source checkedEnhanced prediction of protein functional identity through the integration of sequence and structural features; Enhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, ESM2 row, AUROC column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Reproduction

Split: 41,600 protein pairs; balanced functional-identity classes; random 56.25/18.75/25% training/validation/test split.
Adaptation: Paper-specific evaluated pipeline; exact checkpoint not inferred from label
Scoring implementation: Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Access requirements and official instructions: Enzyme-pair functional identity: original held-out test (Enzyme functional identity prediction)

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

2 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statement	Original source and location	Review and provenance
attributes.metric_direction higher Individual claims	Enhanced prediction of protein functional identity through the integration of sequence and structural features Original source ↗ Table 1, row ESM2, column AUROC; XML row5 column8 Version: PMC11609699.1 Retrieved: 2026-09-17T07:56:15.783679+00:00	source checked automated source review · 2026-09-17 independent paper Audit details Field: `attributes.metric_direction` Claim: paper-claim-8701d55c73b06c9f52 Source artifact SHA-256: `db33e0542005ffae00cd644dfe697185b94c8823d5aee2768620a6db0c48e56f` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact
attributes.printed_value 0.7991 Individual claims	Enhanced prediction of protein functional identity through the integration of sequence and structural features Original source ↗ Table 1, ESM2 row, AUROC column Version: PMC11609699.1 Retrieved: 2026-09-16T10:33:35.728Z	source checked primary xml exact label cell check · 2026-09-16T10:33:35.728Z independent paper Audit details Exact row/header labels and numeric cell matched. Check verifies transcription, not experimental correctness. Field: `attributes.printed_value` Claim: claim-lit-020 Source artifact SHA-256: `db33e0542005ffae00cd644dfe697185b94c8823d5aee2768620a6db0c48e56f` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `db33e0542005ffae00cd644dfe697185b94c8823d5aee2768620a6db0c48e56f` Extraction artifact

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Release 2026-09-29-06401fd5b220 · Record review: source checked

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Technical metadata and extraction receipts

Stable ID: lit-020

areas: proteins-complexes
tasks: Enzyme functional identity prediction
printed value: 0.7991
numeric value: 0.7991
metric: AUROC
metric direction: higher
unit: unitless
uncertainty: Not reported
source locator: Table 1, ESM2 row, AUROC column
review: method: primary_xml_exact_label_cell_check; reviewer: rewire deterministic table checker v1; reviewed at: 2026-09-16T10:33:35.728Z; notes: Exact row/header labels and numeric cell matched. Check verifies transcription, not experimental correctness.; evidence: Table 1, ESM2 row, AUROC column; cell: 0.7991; artifact sha256: db33e0542005ffae00cd644dfe697185b94c8823d5aee2768620a6db0c48e56f; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC11609699/fullTextXML
legacy id: lit-020
legacy row: id: lit-020; paper id: fujisan-2024; domain id: proteins-complexes; task: Enzyme functional identity prediction; model: ESM2; model version: Not reported; dataset: FUJISAN test sub-dataset; dataset version: Not reported; split: Not reported; metric: AUROC; value: 0.7991; unit: unitless; uncertainty: Not reported; protocol: Comparator evaluated on the paper-reported test sub-dataset.; source locator: Table 1, ESM2 row, AUROC column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11609699/; evaluation origin: independent_paper; reviewed utc: 2026-09-15T23:25:00Z
missing metadata: model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract

Related records

evaluation: ESM2: Enzyme functional identity prediction
subject: Reported AUROC for ESM2
subject: ESM2 · AUROC · FUJISAN test sub-dataset: attributes.metric_direction

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