Result

68% precision

delavega2025-dragen42-hs-filters-coriell-panel precision (exons spanned: >5)

Tested configuration: DRAGEN 4.2 high-sensitivity mode with custom artifact filters (HS-F)
Protocol: Coriell virtual gene-panel CNV precision by exon count and length (De La Vega et al. Table 1)
Dataset: 25 Coriell cell lines with documented CNVs, 184-gene virtual panel
Procedure: cnv-20261009-protocol-delavega2025-coriell-virtual-panel
Evaluation: HS-F on Coriell virtual panel
Coverage: Not reported scored / Not reported eligible
Uncertainty: Not reported by the source
Evidence: Author-reported evaluation · source checkedBenchmarking of germline copy number variant callers from whole genome sequencing data for clinical applications · Table 1, row '>5' / '>10', column 'Precision HS-F (%)' (exons spanned block)

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.

Reproduction

Split: 25 cell lines
Adaptation: Not reported
Scoring implementation: Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-10-09-9307685239b3
Property and statement	Original source and location	Review and provenance
Reported result 68 Individual claims	Benchmarking of germline copy number variant callers from whole genome sequencing data for clinical applications Original source ↗ Table 1, row '>5' / '>10', column 'Precision HS-F (%)' (exons spanned block) Version: Bioinformatics Advances 5(1):vbaf071, published 2025-04-10; PMC12005901 full-text XML Retrieved: 2026-10-09T15:24:22Z	source checked ["source-hash-verification","deterministic-table-parse","independent-cell-check"] · 2026-10-09 author reported Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Extracted by deterministic parse of the pinned XLSX cell XML (scripts in the batch retrieval log), with row and column labels asserted. printed_value is the shortest round-trip decimal of the stored cell value; source_cell_text keeps the raw stored text. Pending independent review. Independent review 2026-10-09: value and identity match the source. This value comes from the article XML Table 1, not an XLSX; the extractor note's reference to XLSX cell XML does not apply to it. Field: `attributes.printed_value` Source artifact SHA-256: `ed6492f89d77454416d4fb135bb56bdcd5fb202e8a0ba94b92fa450441b4091f` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `ed6492f89d77454416d4fb135bb56bdcd5fb202e8a0ba94b92fa450441b4091f` Extraction artifact

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Sources and history

Release 2026-10-09-9307685239b3 · Record review: source checked

1 source records and release history

Benchmarking of germline copy number variant callers from whole genome sequencing data for clinical applications · Original source · Bioinformatics Advances 5(1):vbaf071, published 2025-04-10; PMC12005901 full-text XML

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Technical metadata and extraction receipts

Stable ID: cnv-20261009-result-delavega2025-dragen42-hs-filters-coriell-panel-exons-gt5

metric: precision
metric qualifier: exons spanned: >5
metric direction: higher
unit: percent
printed value: 68
numeric value: 68
source locator: Table 1, row '>5' / '>10', column 'Precision HS-F (%)' (exons spanned block)
missing metadata: uncertainty: reason: unreported
review: method: source-hash-verification; deterministic-table-parse; independent-cell-check; method note: Re-downloaded the artifact and matched its SHA-256. Read the cell with a separate stdlib OOXML/XML parser written for this review (De La Vega article XML table-wrap vbaf071-T1); the extractor's scripts were not imported or run. Checked printed and numeric value (shortest round-trip decimal of the stored double), raw cell text, metric, qualifier, unit and direction from the row and column headers, and the linked evaluation's configuration and protocol.; reviewer: claude; reviewer note: Separate Claude review agent, independent of the extractor; no human review claimed; date: 2026-10-09; artifact sha256: ed6492f89d77454416d4fb135bb56bdcd5fb202e8a0ba94b92fa450441b4091f; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12005901/fullTextXML; note: Extracted by deterministic parse of the pinned XLSX cell XML (scripts in the batch retrieval log), with row and column labels asserted. printed_value is the shortest round-trip decimal of the stored cell value; source_cell_text keeps the raw stored text. Pending independent review. Independent review 2026-10-09: value and identity match the source. This value comes from the article XML Table 1, not an XLSX; the extractor note's reference to XLSX cell XML does not apply to it.
raw xml value: 68

Related records

evaluation: HS-F on Coriell virtual panel

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