Dilated ResNet
Supervised dilated convolutional network baseline, built from three or four DilatedResNet blocks and trained from scratch on each task's training split.
Overview
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Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
7 evaluations · 7 results. Different protocols are not a single leaderboard.
Sorted by AUPRC (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
All 7 result rows with coverage, uncertainty and sources
Filter evaluations
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Pipeline: Dilated ResNet | Protocol: MIMIC mRNABench probes eCLIP: eCLIP prediction Dataset subset: mRNABench eCLIP as reported in MIMIC Table S11 (MIMIC mRNABench probes split) | 0.421 AUPRC fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceDilated ResNet on MIMIC mRNABench probes eCLIP: eCLIP prediction MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Aggregation: Not reported MIMIC v1: Table S11 and Appendix D.3 · Table S11 (HTML A4.T11), data row 3 (Dilated ResNet [ 71 ]), column 2 (eCLIP) |
| Pipeline: Dilated ResNet | Protocol: MIMIC mRNABench probes GO: GO prediction Dataset subset: mRNABench GO as reported in MIMIC Table S11 (MIMIC mRNABench probes split) | 0.155 AUPRC fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceDilated ResNet on MIMIC mRNABench probes GO: GO prediction MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Aggregation: Not reported MIMIC v1: Table S11 and Appendix D.3 · Table S11 (HTML A4.T11), data row 3 (Dilated ResNet [ 71 ]), column 3 (GO) |
| Pipeline: Dilated ResNet | Protocol: MIMIC mRNABench probes MRL (LBKWK): MRL (LBKWK) prediction Dataset subset: mRNABench MRL (LBKWK) as reported in MIMIC Table S11 (MIMIC mRNABench probes split) | 0.411 Pearson unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceDilated ResNet on MIMIC mRNABench probes MRL (LBKWK): MRL (LBKWK) prediction MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Aggregation: Not reported MIMIC v1: Table S11 and Appendix D.3 · Table S11 (HTML A4.T11), data row 3 (Dilated ResNet [ 71 ]), column 6 (MRL (LBKWK)) |
| Pipeline: Dilated ResNet | Protocol: MIMIC mRNABench probes MRL (Sugimoto): MRL (Sugimoto) prediction Dataset subset: mRNABench MRL (Sugimoto) as reported in MIMIC Table S11 (MIMIC mRNABench probes split) | 0.448 Pearson unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceDilated ResNet on MIMIC mRNABench probes MRL (Sugimoto): MRL (Sugimoto) prediction MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Aggregation: Not reported MIMIC v1: Table S11 and Appendix D.3 · Table S11 (HTML A4.T11), data row 3 (Dilated ResNet [ 71 ]), column 7 (MRL (Sugimoto)) |
| Pipeline: Dilated ResNet | Protocol: MIMIC mRNABench probes Protein Localization: Protein Localization prediction Dataset subset: mRNABench Protein Localization as reported in MIMIC Table S11 (MIMIC mRNABench probes split) | 0.169 AUPRC fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceDilated ResNet on MIMIC mRNABench probes Protein Localization: Protein Localization prediction MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Aggregation: Not reported MIMIC v1: Table S11 and Appendix D.3 · Table S11 (HTML A4.T11), data row 3 (Dilated ResNet [ 71 ]), column 4 (Protein Localization) |
| Pipeline: Dilated ResNet | Protocol: MIMIC mRNABench probes RNA Half Life: RNA Half Life prediction Dataset subset: mRNABench RNA Half Life as reported in MIMIC Table S11 (MIMIC mRNABench probes split) | 0.647 Pearson unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceDilated ResNet on MIMIC mRNABench probes RNA Half Life: RNA Half Life prediction MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Aggregation: Not reported MIMIC v1: Table S11 and Appendix D.3 · Table S11 (HTML A4.T11), data row 3 (Dilated ResNet [ 71 ]), column 8 (RNA Half Life) |
| Pipeline: Dilated ResNet | Protocol: MIMIC mRNABench probes RNA Localization: RNA Localization prediction Dataset subset: mRNABench RNA Localization as reported in MIMIC Table S11 (MIMIC mRNABench probes split) | 0.645 AUPRC fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceDilated ResNet on MIMIC mRNABench probes RNA Localization: RNA Localization prediction MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Aggregation: Not reported MIMIC v1: Table S11 and Appendix D.3 · Table S11 (HTML A4.T11), data row 3 (Dilated ResNet [ 71 ]), column 5 (RNA Localization) |
Source checking is not independent reproduction. Release 2026-11-02-a7f03c9e55a5.
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How it works, versions and access
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Evidence
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Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Description Supervised dilated convolutional network baseline, built from three or four DilatedResNet blocks and trained from scratch on each task's training split. Individual claims | MIMIC v1: Table S11 and Appendix D.3 expansion-p3-mrnabench-2025: Appendix A, Overview of Evaluated Models (baselines paragraph); coverage-source-mimic-2026-v1-html: Table S11 and Appendix D.3 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: arXiv version 1 | source checked ["automated-source-review","ai-assisted-source-review"] · 2026-10-11 Audit detailsReplace a placeholder or provenance description with a sourced functional description (issue #88 follow-up). Historical releases retain the original value. Independent review 2026-10-11: Supported by mRNABench Appendix A 'Overview of Evaluated Models' (PMC12265608, matches pin): ab-initio supervised dilated CNN, trained from scratch on the train split, three or four DilatedResNetBlocks. MIMIC (matches pin) cites the row as Dilated ResNet [71], and [71] is mRNABench. The old text is kept in source_locator. Field: Claim: metadata-correction-cb95a92bc7ef124e1e3b Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description Supervised dilated convolutional network baseline, built from three or four DilatedResNet blocks and trained from scratch on each task's training split. Individual claims | mRNABench: A curated benchmark for mature mRNA property and function prediction expansion-p3-mrnabench-2025: Appendix A, Overview of Evaluated Models (baselines paragraph); coverage-source-mimic-2026-v1-html: Table S11 and Appendix D.3 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: preprint archived 2025-07-08 | source checked ["automated-source-review","ai-assisted-source-review"] · 2026-10-11 Audit detailsReplace a placeholder or provenance description with a sourced functional description (issue #88 follow-up). Historical releases retain the original value. Independent review 2026-10-11: Supported by mRNABench Appendix A 'Overview of Evaluated Models' (PMC12265608, matches pin): ab-initio supervised dilated CNN, trained from scratch on the train split, three or four DilatedResNetBlocks. MIMIC (matches pin) cites the row as Dilated ResNet [71], and [71] is mRNABench. The old text is kept in source_locator. Field: Claim: metadata-correction-cb95a92bc7ef124e1e3b Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
2 source records and release history
- MIMIC v1: Table S11 and Appendix D.3 · Original source · arXiv version 1
- mRNABench: A curated benchmark for mature mRNA property and function prediction · Original source · preprint archived 2025-07-08
Technical metadata and extraction receipts
Stable ID: mimic-2026-mrnabench-method-dilated-resnet
- areas
- rna-transcriptomes
- source locator
- Table S11, row Dilated ResNet [ 71 ]; Appendix D.3; Prior mRNABench evaluated pipeline, quoted in MIMIC Table S11; not a new execution
- missing metadata
- checkpoint revision: reason: unreported; parameters: reason: unextracted
Related records
- subject: Dilated ResNet: description
- system: Dilated ResNet on MIMIC mRNABench probes eCLIP: eCLIP prediction
- system: Dilated ResNet on MIMIC mRNABench probes GO: GO prediction
- system: Dilated ResNet on MIMIC mRNABench probes MRL (LBKWK): MRL (LBKWK) prediction
- system: Dilated ResNet on MIMIC mRNABench probes MRL (Sugimoto): MRL (Sugimoto) prediction
- system: Dilated ResNet on MIMIC mRNABench probes Protein Localization: Protein Localization prediction
- system: Dilated ResNet on MIMIC mRNABench probes RNA Half Life: RNA Half Life prediction
- system: Dilated ResNet on MIMIC mRNABench probes RNA Localization: RNA Localization prediction