MSA Transformer
Named prediction model family identified in the cited primary source. Exact fitted configurations and scores are separate records.
Overview
Named prediction model family identified in the cited primary source. Exact fitted configurations and scores are separate records.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
2 evaluations · 2 results. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: MSA Transformer (ensemble) [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | 0.24 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceMSA Transformer (ensemble) AMFR official snapshot Not reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=MSA Transformer (ensemble) |
| Configuration: MSA Transformer (single) [ProteinGym 144fe22b snapshot] | Protocol: ProteinGym AMFR official zero-shot Spearman snapshot Dataset subset: ProteinGym AMFR 4G3O official snapshot cohort | 0.22 spearman_rho correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceMSA Transformer (single) AMFR official snapshot Not reported Aggregation: Not reported ProteinGym AMFR assay-level Spearman comparison · DMS_substitutions_Spearman_DMS_level.csv line 15, DMS ID=AMFR_HUMAN_Tsuboyama_2023_4G3O, column=MSA Transformer (single) |
Source checking is not independent reproduction. Release 2026-09-30-e37e3ab1284d.
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Evidence
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Sources and history
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Release 2026-09-30-e37e3ab1284d · Record review: source checked
1 source records and release history
- ProteinGym AMFR assay-level Spearman comparison · Original source · 144fe22b07dfaeec2b366f2346203a9838a55b4c
Technical metadata and extraction receipts
Stable ID: uc20260930-model-msa-transformer
- areas
- proteins-complexes
- source locator
- Pinned ProteinGym Spearman CSV header: MSA Transformer (single)
- review
- method: automated_source_review; reviewer: Codex experimental-use-case curation; date: 2026-09-30; reviewed at: 2026-09-30T21:40:59.576893+00:00; scope: Primary-source transcription and catalogue applicability audit; not human scientific review or independent experimental reproduction.
- entity level
- family
- identity scope
- Family/method identity only; no undocumented checkpoint equivalence.