Nucleotide Transformer v3
Nucleotide Transformer v3 genomic language model family (pre- and post-trained checkpoints).
Results are recorded on linked configurations and versions of this model. Their settings and evaluations are kept separate below.
Results on linked records
This model has no results of its own in this release. 18 linked records have results. They are not assigned to the underlying model: each record keeps its own settings and evaluations, and its scores are on its own page.
- NTv3 cosine distance (Pearce et al. 2026 Figure 1b and 1c) Configuration · configuration · 1 evaluation · 1 result
- NTv3 650M layer-11 embedding probe (Pearce et al. 2026 Figure 1d) Configuration · configuration · 1 evaluation · 1 result
- NTv3 100M training run (Boshar et al. 2025) Configuration · configuration · 1 evaluation · 5 results
- NTv3 650M training run (Boshar et al. 2025) Configuration · configuration · 1 evaluation · 5 results
- NTv3 8M training run (Boshar et al. 2025) Configuration · configuration · 1 evaluation · 3 results
- NTv3 (full fine-tuning, GFMBench-API) Configuration · configuration · 10 evaluations · 40 results
- NTv3 (zero-shot, GFMBench-API) Configuration · configuration · 18 evaluations · 72 results
- NTv3-100m-post (1% eval (evaluated with 1% of the training set), GUANinE v1.1) Configuration · configuration · 7 evaluations · 7 results
- NTv3-100m-pre (1% eval (evaluated with 1% of the training set), GUANinE v1.1) Configuration · configuration · 7 evaluations · 7 results
- NTv3-650m-post (1% eval (evaluated with 1% of the training set), GUANinE v1.1) Configuration · configuration · 6 evaluations · 6 results
- NTv3-8m-pre (1% eval (evaluated with 1% of the training set), GUANinE v1.1) Configuration · configuration · 1 evaluation · 1 result
- NTv3-100M-post (ViroBench classification) Configuration · configuration · 12 evaluations · 12 results
- NTv3-100M-pre (ViroBench classification) Configuration · configuration · 12 evaluations · 12 results
- NTv3-650M-post (ViroBench classification) Configuration · configuration · 12 evaluations · 12 results
- NTv3-650M-pre (ViroBench classification) Configuration · configuration · 12 evaluations · 12 results
- NTv3-8M-pre (ViroBench classification) Configuration · configuration · 12 evaluations · 12 results
- NTv3 650M Post (Alavi 2026) Configuration · configuration · 3 evaluations · 14 results
- NTv3 650M Pre (Alavi 2026) Configuration · configuration · 3 evaluations · 14 results
Overview
An explanatory profile has not yet been reviewed for this record.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Use this model
How it works, versions and access
Strengths, limitations and unresolved questions
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
0 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|
No evidence rows match these filters. Choose another scope or clear the search.
Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
1 source record and release history
- GUANinE v1.1 reveals complementarity of supervised and genomic language models · Original source · Bioinformatics 2026, btag427 (issue date 2026-08-01); PMC13501288 full-text XML
Technical metadata and extraction receipts
Stable ID: lit-genomics-20261011-guanine-model-nucleotide-transformer-v3
- areas
- dna-genomes
- contexts
- research
- method types
- foundation_model
- reported name
- Nucleotide Transformer v3
- entity level
- family
- source locator
- Tables 2-4 row labels; Methods
- missing metadata
- version: reason: inapplicable; note: Family record; versions are on configurations
Related records
- subject: NTv3 inference hardware
- configuration of: NTv3 cosine distance (Pearce et al. 2026 Figure 1b and 1c)
- configuration of: NTv3 650M layer-11 embedding probe (Pearce et al. 2026 Figure 1d)
- configuration of: NTv3 100M training run (Boshar et al. 2025)
- configuration of: NTv3 650M training run (Boshar et al. 2025)
- configuration of: NTv3 8M training run (Boshar et al. 2025)
- configuration of: NTv3 (full fine-tuning, GFMBench-API)
- configuration of: NTv3 (zero-shot, GFMBench-API)
- configuration of: NTv3-100m-post (1% eval (evaluated with 1% of the training set), GUANinE v1.1)
- configuration of: NTv3-100m-pre (1% eval (evaluated with 1% of the training set), GUANinE v1.1)
- configuration of: NTv3-650m-post (1% eval (evaluated with 1% of the training set), GUANinE v1.1)
- configuration of: NTv3-8m-pre (1% eval (evaluated with 1% of the training set), GUANinE v1.1)
- configuration of: NTv3-100M-post (ViroBench classification)
- configuration of: NTv3-100M-pre (ViroBench classification)
- configuration of: NTv3-650M-post (ViroBench classification)
- configuration of: NTv3-650M-pre (ViroBench classification)
- configuration of: NTv3-8M-pre (ViroBench classification)
- configuration of: NTv3 650M Post (Alavi 2026)
- configuration of: NTv3 650M Pre (Alavi 2026)