SegmentNT human genome annotation evaluation of SegmentEnformer-30kb on 5UTR: per-nucleotide annotation (auPRC), scored with Area under precision-recall curve.
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1 evaluation · 1 result. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: SegmentEnformer-30kb | Protocol: SegmentNT human genome annotation 5UTR auPRC: 5UTR: per-nucleotide annotation (auPRC) Dataset subset: Human genome 5UTR test chromosomes 20 and 21 (SegmentNT human genome annotation split) | 0.37 (± 0.006) auprc dimensionless · higher Uncertainty: type: standard_deviation; value: 0.006 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTest chromosomes 20 and 21; validation chromosome 22; training remaining chromosomes. Test chunks with genes homologous to train/validation genes excluded using Ensembl BioMart accessed 2024-05-08; homologous distal regulatory elements not excluded. Ten test-set samplings with sliding windows beginning at different genomic starting positions. Mean plus reported standard deviation; not ten training seeds. Best validation checkpoint by average MCC across 14 elements. Per-nucleotide predictions pooled across test sequences separately for each genomic element. MCC and auPRC are separate metrics, not cross-element or cross-table pooled comparisons. Aggregation: Not reported SegmentNT supplementary information: complete Tables 2 and 3 · Supplementary Table 3; PDF page 5 (printed 4); block 1; data row 18; model SegmentEnformer-30kb; column 5UTR |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
Test chromosomes 20 and 21; validation chromosome 22; training remaining chromosomes. Test chunks with genes homologous to train/validation genes excluded using Ensembl BioMart accessed 2024-05-08; homologous distal regulatory elements not excluded. Ten test-set samplings with sliding windows beginning at different genomic starting positions. Mean plus reported standard deviation; not ten training seeds. Best validation checkpoint by average MCC across 14 elements. Per-nucleotide predictions pooled across test sequences separately for each genomic element. MCC and auPRC are separate metrics, not cross-element or cross-table pooled comparisons.
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16 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.adaptation Task-specific supervised segmentation training; source-specific backbone and input length retained. Context-only references | SegmentNT supplementary information: complete Tables 2 and 3 Supplementary Table 3; PDF page 5 (printed 4); block 1; data row 18; model SegmentEnformer-30kb; column 5UTR Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.metric_implementation Area under precision-recall curve Context-only references | SegmentNT supplementary information: complete Tables 2 and 3 Supplementary Table 3; PDF page 5 (printed 4); block 1; data row 18; model SegmentEnformer-30kb; column 5UTR Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.protocol_id segmentnt-supplement-2025-task-5utr-auprc Context-only references | SegmentNT supplementary information: complete Tables 2 and 3 Supplementary Table 3; PDF page 5 (printed 4); block 1; data row 18; model SegmentEnformer-30kb; column 5UTR Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.evaluation_group_id segmentnt-supplement-2025-method-segmentenformer-30kb-segmentnt-supplement-2025-dataset-human-genome-5utr-test-chromosomes-20-and-21-evaluation-setup Context-only references | SegmentNT supplementary information: complete Tables 2 and 3 Supplementary Table 3; PDF page 5 (printed 4); block 1; data row 18; model SegmentEnformer-30kb; column 5UTR Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.evidence_overlap Tables 2 and 3 report different metrics over the same paper experiment set. They are not independent reproductions or replications. Context-only references | SegmentNT supplementary information: complete Tables 2 and 3 Supplementary Table 3; PDF page 5 (printed 4); block 1; data row 18; model SegmentEnformer-30kb; column 5UTR Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.origin author_reported Context-only references | SegmentNT supplementary information: complete Tables 2 and 3 Supplementary Table 3; PDF page 5 (printed 4); block 1; data row 18; model SegmentEnformer-30kb; column 5UTR Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.protocol Test chromosomes 20 and 21; validation chromosome 22; training remaining chromosomes. Test chunks with genes homologous to train/validation genes excluded using Ensembl BioMart accessed 2024-05-08; homologous distal regulatory elements not excluded. Ten test-set samplings with sliding windows beginning at different genomic starting positions. Mean plus reported standard deviation; not ten training seeds. Best validation checkpoint by average MCC across 14 elements. Per-nucleotide predictions pooled across test sequences separately for each genomic element. MCC and auPRC are separate metrics, not cross-element or cross-table pooled comparisons. Context-only references | SegmentNT supplementary information: complete Tables 2 and 3 Supplementary Table 3; PDF page 5 (printed 4); block 1; data row 18; model SegmentEnformer-30kb; column 5UTR Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.published_score_reproduction false Context-only references | SegmentNT supplementary information: complete Tables 2 and 3 Supplementary Table 3; PDF page 5 (printed 4); block 1; data row 18; model SegmentEnformer-30kb; column 5UTR Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.same_paper_experiment_set segmentnt-2025-human-genome-14-elements Context-only references | SegmentNT supplementary information: complete Tables 2 and 3 Supplementary Table 3; PDF page 5 (printed 4); block 1; data row 18; model SegmentEnformer-30kb; column 5UTR Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.source_locator Supplementary Table 3; PDF page 5 (printed 4); block 1; data row 18; model SegmentEnformer-30kb; column 5UTR Context-only references | SegmentNT supplementary information: complete Tables 2 and 3 Supplementary Table 3; PDF page 5 (printed 4); block 1; data row 18; model SegmentEnformer-30kb; column 5UTR Version: Published supplementary information to s41592-025-02881-2; SHA-256 pinned snapshot | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
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Release 2026-09-29-06401fd5b220 · Record review: source checked
Stable ID: segmentnt-supplement-2025-evaluation-segmentenformer-30kb-5utr-auprc