rewirebio.iobenchmarks
Evaluation

GENA-LM 110M training peak memory, stage + Checkpointing

Published result; transcribed, not reproduced.

Evaluation results

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Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: GENA-LM 110M, training with FlashAttention and checkpointing (Saadat and Fellay 2026)Protocol: Training peak GPU memory under progressive optimizations, sequence length 1000, batch size 16 (Saadat and Fellay 2026 Figure 3)
Dataset: Synthetic uniform random DNA sequences, seed 42 (Saadat and Fellay 2026)
1.18 Peak memory (Training, sequence length 1000, batch size 16, stage + Checkpointing (FlashAttention and activation checkpointing))
gigabyte · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

GENA-LM 110M training peak memory, stage + Checkpointing

saadat-fellay-20261015-protocol-training-peak-memory

Aggregation: Not reported

Optimizing genomic language models for efficient training, fine-tuning, and inference (Saadat and Fellay, ICLR 2026 workshop) · Section 3.3 'ZeRO offload' paragraph (page 6): '(e.g., GENA-LM 110M increases from 1.18 to 2.49 GB)'; stage + Checkpointing (FlashAttention and activation checkpointing) of Figure 3

Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.

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0 of 4 readiness checks met. These checks assess whether the evidence supports a reproducible investigation; a source-checked score alone does not meet them.

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Release 2026-10-22-1b7cf027e4f6 · Evidence verified: Not verified

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  • Metrics are recomputed from the saved predictions: not yet verified

Verified: Not verified

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  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Metrics are recomputed from the saved predictions: not yet verified
  • Sample annotations are recorded: not yet verified
  • Dependence between samples is assessed: not yet verified

Verified: Not verified

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A pinned recipe describes the inputs, environment and resource requirements.

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Verified: Not verified

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Validate independently

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Evaluation procedure

Training peak GPU memory under progressive optimizations, sequence length 1000, batch size 16 (Saadat and Fellay 2026 Figure 3)

Configuration
GENA-LM 110M, training with FlashAttention and checkpointing (Saadat and Fellay 2026)
Protocol
Training peak GPU memory under progressive optimizations, sequence length 1000, batch size 16 (Saadat and Fellay 2026 Figure 3)
Dataset
Synthetic uniform random DNA sequences, seed 42 (Saadat and Fellay 2026)
origin
Independent external evaluation
configuration
Primary source as retrieved 2026-10-15
split
Not applicable
population
Training batches of 16 sequences of length 1000
inputs
DNA sequence
adaptation
Training step; LoRA or full update not stated
aggregation
Peak over the measured region
budget
Sequence length 1000, batch size 16
protocol id
saadat-fellay-20261015-protocol-training-peak-memory
dataset version
Not reported
metric implementation
Not reported

Metadata review: source checked. Unreported conditions prevent automatic comparisons.

Reproduction

Split
Not applicable
Adaptation
Training step; LoRA or full update not stated
Scoring implementation
Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

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Evidence table

Inspect claims, sources and review details

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One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

19 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statementOriginal source and locationReview and provenance
Comparison: adaptation
Training step; LoRA or full update not stated
Context-only references
Optimizing genomic language models for efficient training, fine-tuning, and inference (Saadat and Fellay, ICLR 2026 workshop)

Original source ↗

Section 3.3 'ZeRO offload' paragraph (page 6); Figure 3

Version: OpenReview PDF headed 'Published as a workshop paper at ICLR 2026' (11 pages; PDF CreationDate 2026-03-09)
Retrieved: 2026-10-15T10:56:26Z

not individually reviewed

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.adaptation

Source artifact SHA-256: 4bc2452110f280a7ba8baa4c7c28beac89769511019666bc77fc33af9b3bcd60

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Comparison: aggregation
Peak over the measured region
Context-only references
Optimizing genomic language models for efficient training, fine-tuning, and inference (Saadat and Fellay, ICLR 2026 workshop)

Original source ↗

Section 3.3 'ZeRO offload' paragraph (page 6); Figure 3

Version: OpenReview PDF headed 'Published as a workshop paper at ICLR 2026' (11 pages; PDF CreationDate 2026-03-09)
Retrieved: 2026-10-15T10:56:26Z

not individually reviewed

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.aggregation

Source artifact SHA-256: 4bc2452110f280a7ba8baa4c7c28beac89769511019666bc77fc33af9b3bcd60

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Comparison: budget
Sequence length 1000, batch size 16
Context-only references
Optimizing genomic language models for efficient training, fine-tuning, and inference (Saadat and Fellay, ICLR 2026 workshop)

Original source ↗

Section 3.3 'ZeRO offload' paragraph (page 6); Figure 3

Version: OpenReview PDF headed 'Published as a workshop paper at ICLR 2026' (11 pages; PDF CreationDate 2026-03-09)
Retrieved: 2026-10-15T10:56:26Z

not individually reviewed

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.budget

Source artifact SHA-256: 4bc2452110f280a7ba8baa4c7c28beac89769511019666bc77fc33af9b3bcd60

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Comparison: dataset version
Not reported
Context-only references
Optimizing genomic language models for efficient training, fine-tuning, and inference (Saadat and Fellay, ICLR 2026 workshop)

Original source ↗

Section 3.3 'ZeRO offload' paragraph (page 6); Figure 3

Version: OpenReview PDF headed 'Published as a workshop paper at ICLR 2026' (11 pages; PDF CreationDate 2026-03-09)
Retrieved: 2026-10-15T10:56:26Z

missing or unspecified

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.dataset_version

Source artifact SHA-256: 4bc2452110f280a7ba8baa4c7c28beac89769511019666bc77fc33af9b3bcd60

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Comparison: inputs
DNA sequence
Context-only references
Optimizing genomic language models for efficient training, fine-tuning, and inference (Saadat and Fellay, ICLR 2026 workshop)

Original source ↗

Section 3.3 'ZeRO offload' paragraph (page 6); Figure 3

Version: OpenReview PDF headed 'Published as a workshop paper at ICLR 2026' (11 pages; PDF CreationDate 2026-03-09)
Retrieved: 2026-10-15T10:56:26Z

not individually reviewed

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.inputs

Source artifact SHA-256: 4bc2452110f280a7ba8baa4c7c28beac89769511019666bc77fc33af9b3bcd60

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Comparison: metric implementation
Not reported
Context-only references
Optimizing genomic language models for efficient training, fine-tuning, and inference (Saadat and Fellay, ICLR 2026 workshop)

Original source ↗

Section 3.3 'ZeRO offload' paragraph (page 6); Figure 3

Version: OpenReview PDF headed 'Published as a workshop paper at ICLR 2026' (11 pages; PDF CreationDate 2026-03-09)
Retrieved: 2026-10-15T10:56:26Z

missing or unspecified

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.metric_implementation

Source artifact SHA-256: 4bc2452110f280a7ba8baa4c7c28beac89769511019666bc77fc33af9b3bcd60

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Comparison: population
Training batches of 16 sequences of length 1000
Context-only references
Optimizing genomic language models for efficient training, fine-tuning, and inference (Saadat and Fellay, ICLR 2026 workshop)

Original source ↗

Section 3.3 'ZeRO offload' paragraph (page 6); Figure 3

Version: OpenReview PDF headed 'Published as a workshop paper at ICLR 2026' (11 pages; PDF CreationDate 2026-03-09)
Retrieved: 2026-10-15T10:56:26Z

not individually reviewed

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.population

Source artifact SHA-256: 4bc2452110f280a7ba8baa4c7c28beac89769511019666bc77fc33af9b3bcd60

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Comparison: protocol id
saadat-fellay-20261015-protocol-training-peak-memory
Context-only references
Optimizing genomic language models for efficient training, fine-tuning, and inference (Saadat and Fellay, ICLR 2026 workshop)

Original source ↗

Section 3.3 'ZeRO offload' paragraph (page 6); Figure 3

Version: OpenReview PDF headed 'Published as a workshop paper at ICLR 2026' (11 pages; PDF CreationDate 2026-03-09)
Retrieved: 2026-10-15T10:56:26Z

not individually reviewed

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.protocol_id

Source artifact SHA-256: 4bc2452110f280a7ba8baa4c7c28beac89769511019666bc77fc33af9b3bcd60

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Comparison: split
Not applicable
Context-only references
Optimizing genomic language models for efficient training, fine-tuning, and inference (Saadat and Fellay, ICLR 2026 workshop)

Original source ↗

Section 3.3 'ZeRO offload' paragraph (page 6); Figure 3

Version: OpenReview PDF headed 'Published as a workshop paper at ICLR 2026' (11 pages; PDF CreationDate 2026-03-09)
Retrieved: 2026-10-15T10:56:26Z

not individually reviewed

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.split

Source artifact SHA-256: 4bc2452110f280a7ba8baa4c7c28beac89769511019666bc77fc33af9b3bcd60

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Origin
independent_paper
Context-only references
Optimizing genomic language models for efficient training, fine-tuning, and inference (Saadat and Fellay, ICLR 2026 workshop)

Original source ↗

Section 3.3 'ZeRO offload' paragraph (page 6); Figure 3

Version: OpenReview PDF headed 'Published as a workshop paper at ICLR 2026' (11 pages; PDF CreationDate 2026-03-09)
Retrieved: 2026-10-15T10:56:26Z

not individually reviewed

No individual claim review recorded

independent paper

Audit details

Field: attributes.origin

Source artifact SHA-256: 4bc2452110f280a7ba8baa4c7c28beac89769511019666bc77fc33af9b3bcd60

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

How to read the evidence

Sources and history

Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

1 source record and release historyDownload this release (gzip)
Technical metadata and extraction receipts

Stable ID: saadat-fellay-20261015-eval-gena-lm-110m-training-peak-memory-flashattention-checkpointing

areas
dna-genomes
contexts
research
origin
independent_paper
protocol
saadat-fellay-20261015-protocol-training-peak-memory
version
Primary source as retrieved 2026-10-15
comparison
split: Not applicable; population: Training batches of 16 sequences of length 1000; inputs: DNA sequence; adaptation: Training step; LoRA or full update not stated; aggregation: Peak over the measured region; budget: Sequence length 1000, batch size 16; protocol id: saadat-fellay-20261015-protocol-training-peak-memory; dataset version: Not reported; metric implementation: Not reported
source locator
Section 3.3 'ZeRO offload' paragraph (page 6); Figure 3
training hardware
NVIDIA H100 (section 2.4); 'H100 94GB GPUs' (section 4)
missing metadata
comparison.dataset version: reason: inapplicable; note: Synthetic sequences generated by the authors; comparison.metric implementation: reason: unreported; note: No code release is cited
review
reviewer: claude; reviewer note: Claude review agent; no human review claimed. Independent Claude (Opus 5.5) review agent, separate from the extraction agent that built this batch. Automated review only. Transcription, not reproduction.; reviewed at: 2026-10-15T22:00:00Z; artifact sha256: 4bc2452110f280a7ba8baa4c7c28beac89769511019666bc77fc33af9b3bcd60; retrieval url: https://openreview.net/pdf?id=NUleWh1GFx; method: source-hash-verification; pdf-text-parse; scope-review; method note: Links, origin, comparison fields and missing-metadata reasons checked against the PDF and the linked protocol.; note: Origin independent_paper checked: the authors (EPFL) are not among the GENA-LM (Fishman et al.) or Nucleotide Transformer (Dalla-Torre et al.) authors and cite both as other work.
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