Published developer benchmark; transcribed, not reproduced.
1 evaluation · 4 results. Different protocols are not a single leaderboard.
Protocol: False positives in seven pathogen-free libraries (Tisza et al. 2026 Table S6) · Dataset: Seven pathogen-free negative-control read libraries (Tisza et al. 2026)
Sorted by False positive rate (percentage of individual reads falsely assigned; mean over seven negative-control libraries) (lower is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
| Tested configuration | False positive rate (percentage of individual reads falsely assigned; mean over seven negative-control libraries) | False positive rate (percentage of individual reads falsely assigned; median over seven negative-control libraries) | False positives (false species reported; maximum over seven negative-control libraries) | False positives (false species reported; median over seven negative-control libraries) |
|---|---|---|---|---|
| Centrifuger v1.1.1-r309, headline setting (Tisza et al. 2026)Evaluation | 0.000003% | 0% | 2 | 0 |
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Centrifuger v1.1.1-r309, headline setting (Tisza et al. 2026) | Protocol: False positives in seven pathogen-free libraries (Tisza et al. 2026 Table S6) Dataset: Seven pathogen-free negative-control read libraries (Tisza et al. 2026) | 2 False positives (false species reported; maximum over seven negative-control libraries) count · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcerna-pathogen-20261011-tisza2026-protocol-neg Aggregation: Not reported Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S6, row 5 (base_tool 'Centrifuger'), column 'max_n_species' (cell F5) |
| Configuration: Centrifuger v1.1.1-r309, headline setting (Tisza et al. 2026) | Protocol: False positives in seven pathogen-free libraries (Tisza et al. 2026 Table S6) Dataset: Seven pathogen-free negative-control read libraries (Tisza et al. 2026) | 0.000003% False positive rate (percentage of individual reads falsely assigned; mean over seven negative-control libraries) percent · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcerna-pathogen-20261011-tisza2026-protocol-neg Aggregation: Not reported Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S6, row 5 (base_tool 'Centrifuger'), column 'mean_fp_pct' (cell D5) |
| Configuration: Centrifuger v1.1.1-r309, headline setting (Tisza et al. 2026) | Protocol: False positives in seven pathogen-free libraries (Tisza et al. 2026 Table S6) Dataset: Seven pathogen-free negative-control read libraries (Tisza et al. 2026) | 0% False positive rate (percentage of individual reads falsely assigned; median over seven negative-control libraries) percent · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcerna-pathogen-20261011-tisza2026-protocol-neg Aggregation: Not reported Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S6, row 5 (base_tool 'Centrifuger'), column 'median_fp_pct' (cell C5) |
| Configuration: Centrifuger v1.1.1-r309, headline setting (Tisza et al. 2026) | Protocol: False positives in seven pathogen-free libraries (Tisza et al. 2026 Table S6) Dataset: Seven pathogen-free negative-control read libraries (Tisza et al. 2026) | 0 False positives (false species reported; median over seven negative-control libraries) count · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcerna-pathogen-20261011-tisza2026-protocol-neg Aggregation: Not reported Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S6, row 5 (base_tool 'Centrifuger'), column 'median_n_species' (cell E5) |
Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.
0 of 4 readiness checks met. These checks assess whether the evidence supports a reproducible investigation; a source-checked score alone does not meet them.
Release 2026-10-22-1b7cf027e4f6 · Evidence verified: Not verified
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False positives in seven pathogen-free libraries (Tisza et al. 2026 Table S6)
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
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One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
38 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Comparison: adaptation Headline setting: minimum-hit-length 100, minimum score 0 Context-only references | EsViritu is a sensitive and specific profiler for viral pathogen detection and genome recovery in metagenomes Supplemental Table S6, row base_tool 'Centrifuger' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv 10.64898/2026.09.29.755457 v1, posted 2026-09-30; JATS XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: adaptation Headline setting: minimum-hit-length 100, minimum score 0 Context-only references | Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) Supplemental Table S6, row base_tool 'Centrifuger' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv 10.64898/2026.09.29.755457 v1 supplementary file DC1 (755457_file02.xlsx) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: aggregation Median, mean or maximum over seven libraries Context-only references | EsViritu is a sensitive and specific profiler for viral pathogen detection and genome recovery in metagenomes Supplemental Table S6, row base_tool 'Centrifuger' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv 10.64898/2026.09.29.755457 v1, posted 2026-09-30; JATS XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: aggregation Median, mean or maximum over seven libraries Context-only references | Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) Supplemental Table S6, row base_tool 'Centrifuger' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv 10.64898/2026.09.29.755457 v1 supplementary file DC1 (755457_file02.xlsx) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: budget Not reported Context-only references | EsViritu is a sensitive and specific profiler for viral pathogen detection and genome recovery in metagenomes Supplemental Table S6, row base_tool 'Centrifuger' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv 10.64898/2026.09.29.755457 v1, posted 2026-09-30; JATS XML | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: budget Not reported Context-only references | Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) Supplemental Table S6, row base_tool 'Centrifuger' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv 10.64898/2026.09.29.755457 v1 supplementary file DC1 (755457_file02.xlsx) | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: dataset version Seven pathogen-free negative-control read libraries (Tisza et al. 2026) Context-only references | EsViritu is a sensitive and specific profiler for viral pathogen detection and genome recovery in metagenomes Supplemental Table S6, row base_tool 'Centrifuger' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv 10.64898/2026.09.29.755457 v1, posted 2026-09-30; JATS XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: dataset version Seven pathogen-free negative-control read libraries (Tisza et al. 2026) Context-only references | Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) Supplemental Table S6, row base_tool 'Centrifuger' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv 10.64898/2026.09.29.755457 v1 supplementary file DC1 (755457_file02.xlsx) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: inputs Short reads (ONT reads for one negative-control library) Context-only references | EsViritu is a sensitive and specific profiler for viral pathogen detection and genome recovery in metagenomes Supplemental Table S6, row base_tool 'Centrifuger' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv 10.64898/2026.09.29.755457 v1, posted 2026-09-30; JATS XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: inputs Short reads (ONT reads for one negative-control library) Context-only references | Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) Supplemental Table S6, row base_tool 'Centrifuger' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv 10.64898/2026.09.29.755457 v1 supplementary file DC1 (755457_file02.xlsx) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
Stable ID: rna-pathogen-20261011-tisza2026-eval-neg-centrifuger