Published RNA metagenomic pathogen-detection comparison; transcribed, not reproduced.
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Release 2026-10-09-8cc1db47c7f9 · Evidence verified: Not verified
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1 evaluation · 2 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: LSHVec (CAMI II pathogen challenge submission) | Protocol: Identify all pathogens and the causal pathogen in one clinical blood metagenome (CAMI II clinical pathogen challenge) Dataset: CAMI II clinical pathogen challenge: blood metagenome from a patient with haemorrhagic fever | no success-rate unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Evaluation origin not reported · Source checkedMethods, coverage and sourceLSHVec: CAMI II clinical pathogen challenge rna-pathogen-20261009-protocol-meyer2022-causal-pathogen Aggregation: Not reported Meyer et al. 2022, Supplementary Tables 1-40 · Supplementary Table 39 cell B5, row 'LSHVec', column 'Causal pathogen in submitted list of taxa' |
| Configuration: LSHVec (CAMI II pathogen challenge submission) | Protocol: Identify all pathogens and the causal pathogen in one clinical blood metagenome (CAMI II clinical pathogen challenge) Dataset: CAMI II clinical pathogen challenge: blood metagenome from a patient with haemorrhagic fever | no success-rate unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Evaluation origin not reported · Source checkedMethods, coverage and sourceLSHVec: CAMI II clinical pathogen challenge rna-pathogen-20261009-protocol-meyer2022-causal-pathogen Aggregation: Not reported Meyer et al. 2022, Supplementary Tables 1-40 · Supplementary Table 39 cell C5, row 'LSHVec', column 'Predicted causal pathogen' |
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rna-pathogen-20261009-protocol-meyer2022-causal-pathogen
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38 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation Submitter's own database and curation Context-only references | Critical Assessment of Metagenome Interpretation: the second round of challenges Supplementary Table 39 row 5 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature Methods 19(4):429, published 2022-04-08; PMC9007738 full-text XML | not individually reviewed No individual claim review recorded unreported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.adaptation Submitter's own database and curation Context-only references | Meyer et al. 2022, Supplementary Tables 1-40 Supplementary Table 39 row 5 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 41592_2022_1431_MOESM3_ESM.xlsx (Supplementary Tables), as linked from the article XML <supplementary-material id="MOESM3"> | not individually reviewed No individual claim review recorded unreported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.aggregation Single sample Context-only references | Critical Assessment of Metagenome Interpretation: the second round of challenges Supplementary Table 39 row 5 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature Methods 19(4):429, published 2022-04-08; PMC9007738 full-text XML | not individually reviewed No individual claim review recorded unreported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.aggregation Single sample Context-only references | Meyer et al. 2022, Supplementary Tables 1-40 Supplementary Table 39 row 5 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 41592_2022_1431_MOESM3_ESM.xlsx (Supplementary Tables), as linked from the article XML <supplementary-material id="MOESM3"> | not individually reviewed No individual claim review recorded unreported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.budget Not reported Context-only references | Critical Assessment of Metagenome Interpretation: the second round of challenges Supplementary Table 39 row 5 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature Methods 19(4):429, published 2022-04-08; PMC9007738 full-text XML | missing or unspecified No individual claim review recorded unreported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.budget Not reported Context-only references | Meyer et al. 2022, Supplementary Tables 1-40 Supplementary Table 39 row 5 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 41592_2022_1431_MOESM3_ESM.xlsx (Supplementary Tables), as linked from the article XML <supplementary-material id="MOESM3"> | missing or unspecified No individual claim review recorded unreported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.dataset_version CAMI II pathogen challenge dataset Context-only references | Critical Assessment of Metagenome Interpretation: the second round of challenges Supplementary Table 39 row 5 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature Methods 19(4):429, published 2022-04-08; PMC9007738 full-text XML | not individually reviewed No individual claim review recorded unreported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.dataset_version CAMI II pathogen challenge dataset Context-only references | Meyer et al. 2022, Supplementary Tables 1-40 Supplementary Table 39 row 5 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 41592_2022_1431_MOESM3_ESM.xlsx (Supplementary Tables), as linked from the article XML <supplementary-material id="MOESM3"> | not individually reviewed No individual claim review recorded unreported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.inputs Paired-end MiSeq reads with human reads replaced Context-only references | Critical Assessment of Metagenome Interpretation: the second round of challenges Supplementary Table 39 row 5 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature Methods 19(4):429, published 2022-04-08; PMC9007738 full-text XML | not individually reviewed No individual claim review recorded unreported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.inputs Paired-end MiSeq reads with human reads replaced Context-only references | Meyer et al. 2022, Supplementary Tables 1-40 Supplementary Table 39 row 5 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 41592_2022_1431_MOESM3_ESM.xlsx (Supplementary Tables), as linked from the article XML <supplementary-material id="MOESM3"> | not individually reviewed No individual claim review recorded unreported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-09-8cc1db47c7f9 · Record review: source checked
Stable ID: rna-pathogen-20261009-eval-meyer2022-lshvec