ProteinGym evaluation of UniRep on Zero-shot substitutions, MCC, scored with MCC.
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Release 2026-09-29-06401fd5b220 · Evidence verified: Not verified
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1 evaluation · 1 result. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: UniRep | Task: ProteinGym ZS-SUB-MCC: Zero-shot substitutions, MCC Dataset subset: ProteinGym substitution DMS assays (ProteinGym split) | 0.147 mcc correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceUniRep on ProteinGym ZS-SUB-MCC: Zero-shot substitutions, MCC Zero-shot scoring of substitution assays, averaged over assays with the correction the paper describes. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 2, row(Protein UniRep), column(Zero-shot substitutions, MCC) |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
Zero-shot scoring of substitution assays, averaged over assays with the correction the paper describes.
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13 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.metric_implementation MCC Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(Protein UniRep), column(Zero-shot substitutions, MCC) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id proteingym-task-zs-sub-mcc Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(Protein UniRep), column(Zero-shot substitutions, MCC) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.evaluation_group_id evaluation-group-proteingym-table-2-zero-shot-substitutions-unirep Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(Protein UniRep), column(Zero-shot substitutions, MCC) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.evaluation_group_name UniRep · zero-shot substitutions Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(Protein UniRep), column(Zero-shot substitutions, MCC) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.evaluation_group_note Counts source-reported evaluation scopes, not individual runs or assays. Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(Protein UniRep), column(Zero-shot substitutions, MCC) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.origin author_reported Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(Protein UniRep), column(Zero-shot substitutions, MCC) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.protocol Zero-shot scoring of substitution assays, averaged over assays with the correction the paper describes. Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(Protein UniRep), column(Zero-shot substitutions, MCC) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator Table 2, row(Protein UniRep), column(Zero-shot substitutions, MCC) Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(Protein UniRep), column(Zero-shot substitutions, MCC) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description ProteinGym evaluation of UniRep on Zero-shot substitutions, MCC, scored with MCC. Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(Protein UniRep), column(Zero-shot substitutions, MCC) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: benchmark proteingym-task-zs-sub-mcc Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(Protein UniRep), column(Zero-shot substitutions, MCC) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
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Release 2026-09-29-06401fd5b220 · Record review: source checked
Stable ID: proteingym-evaluation-unirep-zs-sub-mcc