ProteinGym evaluation of DeepSequence (ensemble) on Zero-shot substitutions, AUC, scored with AUC.
1 evaluation · 1 result. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: DeepSequence (ensemble) | Task: ProteinGym ZS-SUB-AUC: Zero-shot substitutions, AUC Dataset subset: ProteinGym substitution DMS assays (ProteinGym split) | 0.729 AUROC unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDeepSequence (ensemble) on ProteinGym ZS-SUB-AUC: Zero-shot substitutions, AUC Zero-shot scoring of substitution assays, averaged over assays with the correction the paper describes. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 2, row(DeepSequence (ensemble)), column(Zero-shot substitutions, AUC) |
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Zero-shot scoring of substitution assays, averaged over assays with the correction the paper describes.
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12 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Comparison: metric implementation AUC Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(DeepSequence (ensemble)), column(Zero-shot substitutions, AUC) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: protocol id proteingym-task-zs-sub-auc Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(DeepSequence (ensemble)), column(Zero-shot substitutions, AUC) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Evaluation group id evaluation-group-proteingym-table-2-zero-shot-substitutions-deepsequence-ensemble Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(DeepSequence (ensemble)), column(Zero-shot substitutions, AUC) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Evaluation group name DeepSequence (ensemble) · zero-shot substitutions Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(DeepSequence (ensemble)), column(Zero-shot substitutions, AUC) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Origin author_reported Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(DeepSequence (ensemble)), column(Zero-shot substitutions, AUC) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Protocol Zero-shot scoring of substitution assays, averaged over assays with the correction the paper describes. Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(DeepSequence (ensemble)), column(Zero-shot substitutions, AUC) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Source location Table 2, row(DeepSequence (ensemble)), column(Zero-shot substitutions, AUC) Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(DeepSequence (ensemble)), column(Zero-shot substitutions, AUC) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Description ProteinGym evaluation of DeepSequence (ensemble) on Zero-shot substitutions, AUC, scored with AUC. Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(DeepSequence (ensemble)), column(Zero-shot substitutions, AUC) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: assessment proteingym-task-zs-sub-auc Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(DeepSequence (ensemble)), column(Zero-shot substitutions, AUC) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: data proteingym-dataset-proteingym-substitution-dms-assays Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 2, row(DeepSequence (ensemble)), column(Zero-shot substitutions, AUC) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
Stable ID: proteingym-evaluation-deepsequence-ensemble-zs-sub-auc