PertEval-scFM evaluation of the Mean baseline (context-mean, no-perturbation-specific-effect null model) on the Norman single-gene, 2,000-HVG, SPECTRA-sparsification AUSPC protocol.
These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.
Release 2026-10-07-1448159e6a81 · Evidence verified: Not verified
Exact outcomes, predictions, identifiers and evaluator are connected.
Missing or unresolved evidence
Verified: Not verified
Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.
Missing or unresolved evidence
Verified: Not verified
A pinned recipe describes the inputs, environment and resource requirements.
Missing or unresolved evidence
Verified: Not verified
Separate data and exposure records support an independent test.
Missing or unresolved evidence
Verified: Not verified
Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.
No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.
1 evaluation · 1 result. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Mean baseline (context mean, no perturbation-specific effect) | Protocol: PertEval-scFM Norman single-gene (2,000 HVGs) AUSPC across SPECTRA sparsification splits Dataset subset: Norman et al. 2019 single-gene perturbations, K562, top 2,000 HVGs (PertEval-scFM Table 1) | 4.612 ± 0.317 AUSPC 10^-2 (printed column header units) · lower Uncertainty: type: author_reported_propagated_standard_error; reported spread: 0.317; note: The source describes this quantity as a standard error (main-text Figure 2 caption: 'Average AUSPC (down-arrow) across sparsification probabilities for each model with standard error bars') and separately gives its own propagation formula (Appendix F.2, Eqs. F3-F5): AUSPC's uncertainty is derived from each split's own MSE uncertainty via the trapezoidal integral's partial derivatives (sigma^2 = sum_i (d/2)^2 * sigma_phi_i^2, where d=0.1 is the fixed sparsification step size). These two author statements describe the same quantity and are not in conflict: a propagated quantity can correctly be reported as a standard error. This is recorded as the author's own reported, propagated uncertainty; the F3-F5 derivation is the authors' own formula and its mathematical correctness has not been independently validated here. It must not be read as an independently resampled model-seed standard deviation or a confidence interval. The underlying per-split uncertainty is attributed by the source to triplicate experiments per model (Appendix I, Figure I1 caption: 'Experiments were carried out in triplicate for each model'), not to the main-text Figure 2 region. Figure I1's own caption separately states '8 train-test splits of increasing difficulty' for this same Norman single-gene evaluation, while Table 1 prints seven S-columns (S0.1-S0.7) and Appendix F.2 describes the sparsification probabilities as spanning 0.1 to 0.7. This 7-vs-8 discrepancy between the Figure I1 caption and the Table 1 / F.2 grid is preserved exactly as printed, not resolved; it must not be read as establishing an eighth Table 1 column or a confirmed n_runs=7, and no significance claim is made from any overlapping error bars. Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceMean baseline on PertEval-scFM Norman single-gene (2,000 HVGs) AUSPC Trapezoidal-rule AUSPC of MSE, scored on the perturbation-effect delta=P-Xc (Eq. 5), across seven SPECTRA sparsification splits (s=0.1..0.7), Norman single-gene, 2,000 HVGs. Aggregation: Not reported PertEval-scFM (Wenteler et al., ICML 2025), full text · Table 1, Norman single-gene section, row Mean baseline, column AUSPC (10^-2). |
Source checking is not independent reproduction. Release 2026-10-07-1448159e6a81.
Trapezoidal-rule AUSPC of MSE, scored on the perturbation-effect delta=P-Xc (Eq. 5), across seven SPECTRA sparsification splits (s=0.1..0.7), Norman single-gene, 2,000 HVGs.
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
14 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.adaptation Context-mean null predictor (Section 2.2, 'Mean baseline'); no learned parameters. Context-only references | PertEval-scFM (Wenteler et al., ICML 2025), full text Table 1, row Mean baseline, Norman single-gene section, column AUSPC (10^-2). Version: PMLR v267 wenteler25a (as served by the PMLR-affiliated mlresearch/v267 GitHub mirror; ETag "ed9f0fe44cf6edc939ee6950d024f65dcd8dd6f16414bd9f5297cda9395d6e58" at retrieval) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.metric_implementation AUSPC (trapezoidal-rule integral of MSE across seven SPECTRA sparsification-probability train-test splits, s=0.1..0.7; Appendix F.2 Eq. F2) Context-only references | PertEval-scFM (Wenteler et al., ICML 2025), full text Table 1, row Mean baseline, Norman single-gene section, column AUSPC (10^-2). Version: PMLR v267 wenteler25a (as served by the PMLR-affiliated mlresearch/v267 GitHub mirror; ETag "ed9f0fe44cf6edc939ee6950d024f65dcd8dd6f16414bd9f5297cda9395d6e58" at retrieval) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.protocol_id perteval-scfm-2025-protocol-norman-single-2000hvg-auspc Context-only references | PertEval-scFM (Wenteler et al., ICML 2025), full text Table 1, row Mean baseline, Norman single-gene section, column AUSPC (10^-2). Version: PMLR v267 wenteler25a (as served by the PMLR-affiliated mlresearch/v267 GitHub mirror; ETag "ed9f0fe44cf6edc939ee6950d024f65dcd8dd6f16414bd9f5297cda9395d6e58" at retrieval) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.evidence_overlap Independent of the GEARS Supplementary Table 6 catalogue entries for this use case. Serves as this protocol's own negative/no-effect control, distinct from Table 6's own 'No Perturb' control. Context-only references | PertEval-scFM (Wenteler et al., ICML 2025), full text Table 1, row Mean baseline, Norman single-gene section, column AUSPC (10^-2). Version: PMLR v267 wenteler25a (as served by the PMLR-affiliated mlresearch/v267 GitHub mirror; ETag "ed9f0fe44cf6edc939ee6950d024f65dcd8dd6f16414bd9f5297cda9395d6e58" at retrieval) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.origin author_reported Context-only references | PertEval-scFM (Wenteler et al., ICML 2025), full text Table 1, row Mean baseline, Norman single-gene section, column AUSPC (10^-2). Version: PMLR v267 wenteler25a (as served by the PMLR-affiliated mlresearch/v267 GitHub mirror; ETag "ed9f0fe44cf6edc939ee6950d024f65dcd8dd6f16414bd9f5297cda9395d6e58" at retrieval) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.protocol Trapezoidal-rule AUSPC of MSE, scored on the perturbation-effect delta=P-Xc (Eq. 5), across seven SPECTRA sparsification splits (s=0.1..0.7), Norman single-gene, 2,000 HVGs. Context-only references | PertEval-scFM (Wenteler et al., ICML 2025), full text Table 1, row Mean baseline, Norman single-gene section, column AUSPC (10^-2). Version: PMLR v267 wenteler25a (as served by the PMLR-affiliated mlresearch/v267 GitHub mirror; ETag "ed9f0fe44cf6edc939ee6950d024f65dcd8dd6f16414bd9f5297cda9395d6e58" at retrieval) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.published_score_reproduction false Context-only references | PertEval-scFM (Wenteler et al., ICML 2025), full text Table 1, row Mean baseline, Norman single-gene section, column AUSPC (10^-2). Version: PMLR v267 wenteler25a (as served by the PMLR-affiliated mlresearch/v267 GitHub mirror; ETag "ed9f0fe44cf6edc939ee6950d024f65dcd8dd6f16414bd9f5297cda9395d6e58" at retrieval) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.source_locator Table 1, row Mean baseline, Norman single-gene section, column AUSPC (10^-2). Context-only references | PertEval-scFM (Wenteler et al., ICML 2025), full text Table 1, row Mean baseline, Norman single-gene section, column AUSPC (10^-2). Version: PMLR v267 wenteler25a (as served by the PMLR-affiliated mlresearch/v267 GitHub mirror; ETag "ed9f0fe44cf6edc939ee6950d024f65dcd8dd6f16414bd9f5297cda9395d6e58" at retrieval) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.suite_complete false Context-only references | PertEval-scFM (Wenteler et al., ICML 2025), full text Table 1, row Mean baseline, Norman single-gene section, column AUSPC (10^-2). Version: PMLR v267 wenteler25a (as served by the PMLR-affiliated mlresearch/v267 GitHub mirror; ETag "ed9f0fe44cf6edc939ee6950d024f65dcd8dd6f16414bd9f5297cda9395d6e58" at retrieval) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description PertEval-scFM evaluation of the Mean baseline (context-mean, no-perturbation-specific-effect null model) on the Norman single-gene, 2,000-HVG, SPECTRA-sparsification AUSPC protocol. Context-only references | PertEval-scFM (Wenteler et al., ICML 2025), full text Table 1, row Mean baseline, Norman single-gene section, column AUSPC (10^-2). Version: PMLR v267 wenteler25a (as served by the PMLR-affiliated mlresearch/v267 GitHub mirror; ETag "ed9f0fe44cf6edc939ee6950d024f65dcd8dd6f16414bd9f5297cda9395d6e58" at retrieval) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
View linked audit checks and correction history
Release 2026-10-07-1448159e6a81 · Record review: source checked
Stable ID: perteval-scfm-2025-evaluation-mean-baseline