Compare protein origin classifiers; T 5 embeddings plus linear/tree models vs ESM 2 fine-tuning and simple controls. UniRef90 deduplication; proteins longer than1,600 residues excluded; UniRef50 clusters assigned80% training and20% test with no cluster shared. Separate four-fold error-analysis experiment not assigned toTable1.
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1 evaluation · 4 results. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: ESM2 35M | Protocol: Held-out human-versus-virus protein classification (human-versus-viral protein classification) Dataset: human and viral proteins | 98.7% AUROC percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2 35M: Held-out human-versus-virus protein classification Compare protein origin classifiers; T 5 embeddings plus linear/tree models vs ESM 2 fine-tuning and simple controls. UniRef90 deduplication; proteins longer than1,600 residues excluded; UniRef50 clusters assigned80% training and20% test with no cluster shared. Separate four-fold error-analysis experiment not assigned toTable1. Aggregation: Not reported Protein Language Models Expose Viral Immune Mimicry · Table 1, row ESM2 35M, column AUC (%); XML row5 column2 |
| Configuration: ESM2 35M | Protocol: Held-out human-versus-virus protein classification (human-versus-viral protein classification) Dataset: human and viral proteins | 93.8% Prec. percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2 35M: Held-out human-versus-virus protein classification Compare protein origin classifiers; T 5 embeddings plus linear/tree models vs ESM 2 fine-tuning and simple controls. UniRef90 deduplication; proteins longer than1,600 residues excluded; UniRef50 clusters assigned80% training and20% test with no cluster shared. Separate four-fold error-analysis experiment not assigned toTable1. Aggregation: Not reported Protein Language Models Expose Viral Immune Mimicry · Table 1, row ESM2 35M, column Prec.; XML row5 column4 |
| Configuration: ESM2 35M | Protocol: Held-out human-versus-virus protein classification (human-versus-viral protein classification) Dataset: human and viral proteins | 93.9% Recall percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2 35M: Held-out human-versus-virus protein classification Compare protein origin classifiers; T 5 embeddings plus linear/tree models vs ESM 2 fine-tuning and simple controls. UniRef90 deduplication; proteins longer than1,600 residues excluded; UniRef50 clusters assigned80% training and20% test with no cluster shared. Separate four-fold error-analysis experiment not assigned toTable1. Aggregation: Not reported Protein Language Models Expose Viral Immune Mimicry · Table 1, row ESM2 35M, column Recall; XML row5 column5 |
| Configuration: ESM2 35M | Protocol: Held-out human-versus-virus protein classification (human-versus-viral protein classification) Dataset: human and viral proteins | 95.8% Accur. percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM2 35M: Held-out human-versus-virus protein classification Compare protein origin classifiers; T 5 embeddings plus linear/tree models vs ESM 2 fine-tuning and simple controls. UniRef90 deduplication; proteins longer than1,600 residues excluded; UniRef50 clusters assigned80% training and20% test with no cluster shared. Separate four-fold error-analysis experiment not assigned toTable1. Aggregation: Not reported Protein Language Models Expose Viral Immune Mimicry · Table 1, row ESM2 35M, column Accur.; XML row5 column3 |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
Compare protein origin classifiers; T 5 embeddings plus linear/tree models vs ESM 2 fine-tuning and simple controls. UniRef90 deduplication; proteins longer than1,600 residues excluded; UniRef50 clusters assigned80% training and20% test with no cluster shared. Separate four-fold error-analysis experiment not assigned toTable1.
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19 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation Paper-specific evaluated pipeline; exact checkpoint not inferred from label Context-only references | Protein Language Models Expose Viral Immune Mimicry Table 1: AUC (%), Held-out human-versus-virus protein classification Version: version of record | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.aggregation Precision and recall macro-averaged over classes; AUROC and log-loss computed with scikit-learn. Context-only references | Protein Language Models Expose Viral Immune Mimicry Table 1: AUC (%), Held-out human-versus-virus protein classification Version: version of record | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.budget Not reported Context-only references | Protein Language Models Expose Viral Immune Mimicry Table 1: AUC (%), Held-out human-versus-virus protein classification Version: version of record | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.dataset_version Not reported Context-only references | Protein Language Models Expose Viral Immune Mimicry Table 1: AUC (%), Held-out human-versus-virus protein classification Version: version of record | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.inputs Not reported Context-only references | Protein Language Models Expose Viral Immune Mimicry Table 1: AUC (%), Held-out human-versus-virus protein classification Version: version of record | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.metric_implementation Not reported Context-only references | Protein Language Models Expose Viral Immune Mimicry Table 1: AUC (%), Held-out human-versus-virus protein classification Version: version of record | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.population Not reported Context-only references | Protein Language Models Expose Viral Immune Mimicry Table 1: AUC (%), Held-out human-versus-virus protein classification Version: version of record | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id paper-protocol-1352834b9391c1dacb Context-only references | Protein Language Models Expose Viral Immune Mimicry Table 1: AUC (%), Held-out human-versus-virus protein classification Version: version of record | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.split UniRef90 deduplication; proteins longer than1,600 residues excluded; UniRef50 clusters assigned80% training and20% test with no cluster shared. Separate four-fold error-analysis experiment not assigned toTable1. Context-only references | Protein Language Models Expose Viral Immune Mimicry Table 1: AUC (%), Held-out human-versus-virus protein classification Version: version of record | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.subset Held-out human-versus-virus protein classification Context-only references | Protein Language Models Expose Viral Immune Mimicry Table 1: AUC (%), Held-out human-versus-virus protein classification Version: version of record | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
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Release 2026-09-29-06401fd5b220 · Record review: needs review
Stable ID: paper-evaluation-a37f0b2123458018c1