DNABERT 2 and NTv 2 standard fine-tuning; GenomeOcean LoRA. Negatives generated by GenomeOcean itself. CAMI 2 train 18,000/validation 2,000; GTDB test 20,000; balanced natural/artificial 2 kb sequences.
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Release 2026-09-29-06401fd5b220 · Evidence verified: Not verified
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1 evaluation · 3 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Nucleotide Transformers V2 | Protocol: Natural versus GenomeOcean-generated DNA classification (Natural vs artificial microbial genome sequence) Dataset: GenomeOcean natural/artificial sequence test | 83.1 F1 % · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNucleotide Transformers V2: Natural versus GenomeOcean-generated DNA classification DNABERT 2 and NTv 2 standard fine-tuning; GenomeOcean LoRA. Negatives generated by GenomeOcean itself. CAMI 2 train 18,000/validation 2,000; GTDB test 20,000; balanced natural/artificial 2 kb sequences. Aggregation: Not reported GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies · Table 2:, row Nucleotide Transformers V2, column F1; XML row3 column4 |
| Configuration: Nucleotide Transformers V2 | Protocol: Natural versus GenomeOcean-generated DNA classification (Natural vs artificial microbial genome sequence) Dataset: GenomeOcean natural/artificial sequence test | 83% Recall percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNucleotide Transformers V2: Natural versus GenomeOcean-generated DNA classification DNABERT 2 and NTv 2 standard fine-tuning; GenomeOcean LoRA. Negatives generated by GenomeOcean itself. CAMI 2 train 18,000/validation 2,000; GTDB test 20,000; balanced natural/artificial 2 kb sequences. Aggregation: Not reported GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies · Table 2:, row Nucleotide Transformers V2, column Recall; XML row3 column3 |
| Configuration: Nucleotide Transformers V2 | Protocol: Natural versus GenomeOcean-generated DNA classification (Natural vs artificial microbial genome sequence) Dataset: GenomeOcean natural/artificial sequence test | 83.3% Precision percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNucleotide Transformers V2: Natural versus GenomeOcean-generated DNA classification DNABERT 2 and NTv 2 standard fine-tuning; GenomeOcean LoRA. Negatives generated by GenomeOcean itself. CAMI 2 train 18,000/validation 2,000; GTDB test 20,000; balanced natural/artificial 2 kb sequences. Aggregation: Not reported GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies · Table 2:, row Nucleotide Transformers V2, column Precision; XML row3 column2 |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
DNABERT 2 and NTv 2 standard fine-tuning; GenomeOcean LoRA. Negatives generated by GenomeOcean itself. CAMI 2 train 18,000/validation 2,000; GTDB test 20,000; balanced natural/artificial 2 kb sequences.
Metadata review: needs review. Unreported conditions prevent automatic comparisons.
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One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
19 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation Paper-specific evaluated pipeline; exact checkpoint not inferred from label Context-only references | GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies Table 2:: Precision, Natural versus GenomeOcean-generated DNA classification Version: preprint archived 2025-02-05 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.aggregation Not reported Context-only references | GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies Table 2:: Precision, Natural versus GenomeOcean-generated DNA classification Version: preprint archived 2025-02-05 | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.budget Not reported Context-only references | GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies Table 2:: Precision, Natural versus GenomeOcean-generated DNA classification Version: preprint archived 2025-02-05 | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.dataset_version Not reported Context-only references | GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies Table 2:: Precision, Natural versus GenomeOcean-generated DNA classification Version: preprint archived 2025-02-05 | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.inputs Not reported Context-only references | GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies Table 2:: Precision, Natural versus GenomeOcean-generated DNA classification Version: preprint archived 2025-02-05 | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.metric_implementation Not reported Context-only references | GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies Table 2:: Precision, Natural versus GenomeOcean-generated DNA classification Version: preprint archived 2025-02-05 | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.population Not reported Context-only references | GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies Table 2:: Precision, Natural versus GenomeOcean-generated DNA classification Version: preprint archived 2025-02-05 | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id paper-protocol-a8c67b393443253db5 Context-only references | GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies Table 2:: Precision, Natural versus GenomeOcean-generated DNA classification Version: preprint archived 2025-02-05 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.split CAMI 2 train 18,000/validation 2,000; GTDB test 20,000; balanced natural/artificial 2 kb sequences. Context-only references | GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies Table 2:: Precision, Natural versus GenomeOcean-generated DNA classification Version: preprint archived 2025-02-05 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.subset Natural versus GenomeOcean-generated DNA classification Context-only references | GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies Table 2:: Precision, Natural versus GenomeOcean-generated DNA classification Version: preprint archived 2025-02-05 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
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Release 2026-09-29-06401fd5b220 · Record review: needs review
Stable ID: paper-evaluation-4120142bd750b31e8c