F1 of Nucleotide Transformers V2 on GenomeOcean natural/artificial sequence test
83.1% F1
Methods
- Tested configuration
- Nucleotide Transformers V2
- Protocol
- Natural versus GenomeOcean-generated DNA classification (Natural vs artificial microbial genome sequence)
- Dataset
- GenomeOcean natural/artificial sequence test
- Related family profiles
- Nucleotide Transformer
- Procedure
- DNABERT 2 and NTv 2 standard fine-tuning; GenomeOcean LoRA. Negatives generated by GenomeOcean itself. CAMI 2 train 18,000/validation 2,000; GTDB test 20,000; balanced natural/artificial 2 kb sequences.
- Evaluation
- Nucleotide Transformers V2: Natural versus GenomeOcean-generated DNA classification
- Coverage
- Not reported scored / Not reported eligible
- Uncertainty
- Not reported by the source
- Evidence
- Author-reported evaluation · source checkedGenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies · Table 2:, row Nucleotide Transformers V2, column F1; XML row3 column4
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Reproduction
- Split
- CAMI 2 train 18,000/validation 2,000; GTDB test 20,000; balanced natural/artificial 2 kb sequences.
- Adaptation
- Paper-specific evaluated pipeline; exact checkpoint not inferred from label
- Scoring implementation
- Not reported
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result 83.14 Individual claims | GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies Table 2:, row Nucleotide Transformers V2, column F1; XML row3 column4 Version: preprint archived 2025-02-05 | source checked ["transcription","automated-source-review"] · 2026-09-17 author reported Audit detailsSource checked does not mean experimentally reproduced. Field: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
1 source record and release history
- GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies · Original source · preprint archived 2025-02-05
Technical metadata and extraction receipts
Stable ID: paper-result-0209741f5d0e66b495
- areas
- microbes-communities
- tasks
- Natural vs artificial microbial genome sequence
- printed value
- 83.14
- numeric value
- 83.14
- metric
- f1-score
- metric direction
- higher
- unit
- percent
- source locator
- Table 2:, row Nucleotide Transformers V2, column F1; XML row3 column4
- source occurrences
- source id: part2-genomeocean-2025; locator: Table 2:, row Nucleotide Transformers V2, column F1; XML row3 column4
- review
- method: transcription; automated-source-review; date: 2026-09-17; note: Source checked does not mean experimentally reproduced.; method note: primary table; source review separate from transcription
- missing metadata
- checkpoint revision: reason: unextracted; eligible count: reason: unextracted; reported population: reason: unextracted; scored count: reason: unreported; uncertainty: reason: unreported