LightGBM FUJISAN and comparison methods; predictions thresholded to maximizeF 1. Protein-pair splitting is not evidence of disjoint proteins or families. 41,600 protein pairs; balanced functional-identity classes; random 56.25/18.75/25% training/validation/test split.
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1 evaluation · 8 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: DeepFRI | Protocol: Enzyme-pair functional identity: original held-out test (Enzyme functional identity prediction) Dataset: FUJISAN test sub-dataset | 83.2% REC (%) percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDeepFRI: Enzyme-pair functional identity: original held-out test LightGBM FUJISAN and comparison methods; predictions thresholded to maximizeF 1. Protein-pair splitting is not evidence of disjoint proteins or families. 41,600 protein pairs; balanced functional-identity classes; random 56.25/18.75/25% training/validation/test split. Aggregation: Not reported Enhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row DeepFRI, column REC (%); XML row4 column4 |
| Configuration: DeepFRI | Protocol: Enzyme-pair functional identity: original held-out test (Enzyme functional identity prediction) Dataset: FUJISAN test sub-dataset | 80.9% ACC (%) percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDeepFRI: Enzyme-pair functional identity: original held-out test LightGBM FUJISAN and comparison methods; predictions thresholded to maximizeF 1. Protein-pair splitting is not evidence of disjoint proteins or families. 41,600 protein pairs; balanced functional-identity classes; random 56.25/18.75/25% training/validation/test split. Aggregation: Not reported Enhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row DeepFRI, column ACC (%); XML row4 column2 |
| Configuration: DeepFRI | Protocol: Enzyme-pair functional identity: original held-out test (Enzyme functional identity prediction) Dataset: FUJISAN test sub-dataset | 0.679 MCC dimensionless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDeepFRI: Enzyme-pair functional identity: original held-out test LightGBM FUJISAN and comparison methods; predictions thresholded to maximizeF 1. Protein-pair splitting is not evidence of disjoint proteins or families. 41,600 protein pairs; balanced functional-identity classes; random 56.25/18.75/25% training/validation/test split. Aggregation: Not reported Enhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row DeepFRI, column MCC; XML row4 column7 |
| Configuration: DeepFRI | Protocol: Enzyme-pair functional identity: original held-out test (Enzyme functional identity prediction) Dataset: FUJISAN test sub-dataset | 0.814 F1 dimensionless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDeepFRI: Enzyme-pair functional identity: original held-out test LightGBM FUJISAN and comparison methods; predictions thresholded to maximizeF 1. Protein-pair splitting is not evidence of disjoint proteins or families. 41,600 protein pairs; balanced functional-identity classes; random 56.25/18.75/25% training/validation/test split. Aggregation: Not reported Enhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row DeepFRI, column F1; XML row4 column6 |
| Configuration: DeepFRI | Protocol: Enzyme-pair functional identity: original held-out test (Enzyme functional identity prediction) Dataset: FUJISAN test sub-dataset | 21.4% FPR (%) percent · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDeepFRI: Enzyme-pair functional identity: original held-out test LightGBM FUJISAN and comparison methods; predictions thresholded to maximizeF 1. Protein-pair splitting is not evidence of disjoint proteins or families. 41,600 protein pairs; balanced functional-identity classes; random 56.25/18.75/25% training/validation/test split. Aggregation: Not reported Enhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row DeepFRI, column FPR (%); XML row4 column5 |
| Configuration: DeepFRI | Protocol: Enzyme-pair functional identity: original held-out test (Enzyme functional identity prediction) Dataset: FUJISAN test sub-dataset | 0.896 AUROC unitless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDeepFRI: Enzyme-pair functional identity: original held-out test LightGBM FUJISAN and comparison methods; predictions thresholded to maximizeF 1. Protein-pair splitting is not evidence of disjoint proteins or families. 41,600 protein pairs; balanced functional-identity classes; random 56.25/18.75/25% training/validation/test split. Aggregation: Not reported Enhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row DeepFRI, column AUROC; XML row4 column8 |
| Configuration: DeepFRI | Protocol: Enzyme-pair functional identity: original held-out test (Enzyme functional identity prediction) Dataset: FUJISAN test sub-dataset | 79.8% PRE (%) percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDeepFRI: Enzyme-pair functional identity: original held-out test LightGBM FUJISAN and comparison methods; predictions thresholded to maximizeF 1. Protein-pair splitting is not evidence of disjoint proteins or families. 41,600 protein pairs; balanced functional-identity classes; random 56.25/18.75/25% training/validation/test split. Aggregation: Not reported Enhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row DeepFRI, column PRE (%); XML row4 column3 |
| Configuration: DeepFRI | Protocol: Enzyme-pair functional identity: original held-out test (Enzyme functional identity prediction) Dataset: FUJISAN test sub-dataset | 0.907 AUPR dimensionless · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDeepFRI: Enzyme-pair functional identity: original held-out test LightGBM FUJISAN and comparison methods; predictions thresholded to maximizeF 1. Protein-pair splitting is not evidence of disjoint proteins or families. 41,600 protein pairs; balanced functional-identity classes; random 56.25/18.75/25% training/validation/test split. Aggregation: Not reported Enhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, row DeepFRI, column AUPR; XML row4 column9 |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
LightGBM FUJISAN and comparison methods; predictions thresholded to maximizeF 1. Protein-pair splitting is not evidence of disjoint proteins or families. 41,600 protein pairs; balanced functional-identity classes; random 56.25/18.75/25% training/validation/test split.
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One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
19 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation Paper-specific evaluated pipeline; exact checkpoint not inferred from label Context-only references | Enhanced prediction of protein functional identity through the integration of sequence and structural features Table 1: ACC (%), Enzyme-pair functional identity: original held-out test Version: PMC11609699.1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.aggregation Not reported Context-only references | Enhanced prediction of protein functional identity through the integration of sequence and structural features Table 1: ACC (%), Enzyme-pair functional identity: original held-out test Version: PMC11609699.1 | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.budget Not reported Context-only references | Enhanced prediction of protein functional identity through the integration of sequence and structural features Table 1: ACC (%), Enzyme-pair functional identity: original held-out test Version: PMC11609699.1 | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.dataset_version Not reported Context-only references | Enhanced prediction of protein functional identity through the integration of sequence and structural features Table 1: ACC (%), Enzyme-pair functional identity: original held-out test Version: PMC11609699.1 | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.inputs Not reported Context-only references | Enhanced prediction of protein functional identity through the integration of sequence and structural features Table 1: ACC (%), Enzyme-pair functional identity: original held-out test Version: PMC11609699.1 | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.metric_implementation Not reported Context-only references | Enhanced prediction of protein functional identity through the integration of sequence and structural features Table 1: ACC (%), Enzyme-pair functional identity: original held-out test Version: PMC11609699.1 | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.population Not reported Context-only references | Enhanced prediction of protein functional identity through the integration of sequence and structural features Table 1: ACC (%), Enzyme-pair functional identity: original held-out test Version: PMC11609699.1 | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id paper-protocol-7088bcc2f0033b8a29 Context-only references | Enhanced prediction of protein functional identity through the integration of sequence and structural features Table 1: ACC (%), Enzyme-pair functional identity: original held-out test Version: PMC11609699.1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.split 41,600 protein pairs; balanced functional-identity classes; random 56.25/18.75/25% training/validation/test split. Context-only references | Enhanced prediction of protein functional identity through the integration of sequence and structural features Table 1: ACC (%), Enzyme-pair functional identity: original held-out test Version: PMC11609699.1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.subset Enzyme-pair functional identity: original held-out test Context-only references | Enhanced prediction of protein functional identity through the integration of sequence and structural features Table 1: ACC (%), Enzyme-pair functional identity: original held-out test Version: PMC11609699.1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
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Release 2026-09-29-06401fd5b220 · Record review: needs review
Stable ID: paper-evaluation-3977f2a7162b4a7658