rewire.itbenchmarks
Evaluation

Supervised CNN on mRNABench GO: Gene Ontology term prediction

mRNABench evaluation of Supervised CNN on Gene Ontology term prediction, scored with AUPRC (%).

Research readiness

These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.

Release 2026-09-29-06401fd5b220 · Evidence verified: Not verified

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Verified: Not verified

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Investigate discrepancies

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  • dependence: verification is missing

Verified: Not verified

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A pinned recipe describes the inputs, environment and resource requirements.

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Verified: Not verified

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Evaluation results

1 evaluation · 1 result. Different protocols are not a single leaderboard.

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Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Method: Supervised CNNTask: mRNABench GO: Gene Ontology term prediction
Dataset subset: mRNABench GO (mRNABench split)
15.5% auprc
percent · higher

Uncertainty: Not reported

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Supervised CNN on mRNABench GO: Gene Ontology term prediction

A linear probe over frozen embeddings, scored as the mean over ten random seeds.

Aggregation: Not reported

mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Supervised CNN), column(GO)

Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.

Evaluation procedure

A linear probe over frozen embeddings, scored as the mean over ten random seeds.

Method
Supervised CNN
Task
mRNABench GO: Gene Ontology term prediction
Dataset subset
mRNABench GO (mRNABench split)
origin
Author-reported evaluation
configuration
Not reported
protocol id
mrnabench-task-go
metric implementation
AUPRC (%)

Metadata review: source checked. Unreported conditions prevent automatic comparisons.

Reproduction

Split
Not reported
Adaptation
Not reported
Scoring implementation
AUPRC (%)

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

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Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

12 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statementOriginal source and locationReview and provenance
attributes.comparison.metric_implementation
AUPRC (%)
Context-only references
mRNABench: A curated benchmark for mature mRNA property and function prediction

Original source ↗

Table 2, row(Supervised CNN), column(GO)

Version: preprint archived 2025-07-08
Retrieved: 2026-09-16T10:41:16.497221+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.metric_implementation

Source artifact SHA-256: 79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.comparison.protocol_id
mrnabench-task-go
Context-only references
mRNABench: A curated benchmark for mature mRNA property and function prediction

Original source ↗

Table 2, row(Supervised CNN), column(GO)

Version: preprint archived 2025-07-08
Retrieved: 2026-09-16T10:41:16.497221+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.comparison.protocol_id

Source artifact SHA-256: 79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.evidence_experiment_set_id
mrnabench-2025-linear-probing-default-splits
Context-only references
mRNABench: A curated benchmark for mature mRNA property and function prediction

Original source ↗

Table 2, row(Supervised CNN), column(GO)

Version: preprint archived 2025-07-08
Retrieved: 2026-09-16T10:41:16.497221+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.evidence_experiment_set_id

Source artifact SHA-256: 79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.evidence_overlap
Tables 5/6 provide variant-level details of the same probing experiment set summarized by Table 2. These tables are not independent repetitions; no exact selected variant is inferred.
Context-only references
mRNABench: A curated benchmark for mature mRNA property and function prediction

Original source ↗

Table 2, row(Supervised CNN), column(GO)

Version: preprint archived 2025-07-08
Retrieved: 2026-09-16T10:41:16.497221+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.evidence_overlap

Source artifact SHA-256: 79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.origin
author_reported
Context-only references
mRNABench: A curated benchmark for mature mRNA property and function prediction

Original source ↗

Table 2, row(Supervised CNN), column(GO)

Version: preprint archived 2025-07-08
Retrieved: 2026-09-16T10:41:16.497221+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.origin

Source artifact SHA-256: 79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.protocol
A linear probe over frozen embeddings, scored as the mean over ten random seeds.
Context-only references
mRNABench: A curated benchmark for mature mRNA property and function prediction

Original source ↗

Table 2, row(Supervised CNN), column(GO)

Version: preprint archived 2025-07-08
Retrieved: 2026-09-16T10:41:16.497221+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.protocol

Source artifact SHA-256: 79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

attributes.source_locator
Table 2, row(Supervised CNN), column(GO)
Context-only references
mRNABench: A curated benchmark for mature mRNA property and function prediction

Original source ↗

Table 2, row(Supervised CNN), column(GO)

Version: preprint archived 2025-07-08
Retrieved: 2026-09-16T10:41:16.497221+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: attributes.source_locator

Source artifact SHA-256: 79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

description
mRNABench evaluation of Supervised CNN on Gene Ontology term prediction, scored with AUPRC (%).
Context-only references
mRNABench: A curated benchmark for mature mRNA property and function prediction

Original source ↗

Table 2, row(Supervised CNN), column(GO)

Version: preprint archived 2025-07-08
Retrieved: 2026-09-16T10:41:16.497221+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: description

Source artifact SHA-256: 79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Relationship: benchmark
mrnabench-task-go
Context-only references
mRNABench: A curated benchmark for mature mRNA property and function prediction

Original source ↗

Table 2, row(Supervised CNN), column(GO)

Version: preprint archived 2025-07-08
Retrieved: 2026-09-16T10:41:16.497221+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: links:benchmark:mrnabench-task-go

Source artifact SHA-256: 79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Relationship: dataset
mrnabench-dataset-mrnabench-go
Context-only references
mRNABench: A curated benchmark for mature mRNA property and function prediction

Original source ↗

Table 2, row(Supervised CNN), column(GO)

Version: preprint archived 2025-07-08
Retrieved: 2026-09-16T10:41:16.497221+00:00

not individually reviewed

No individual claim review recorded

author reported

Audit details

Field: links:dataset:mrnabench-dataset-mrnabench-go

Source artifact SHA-256: 79f6264ee883535203c63a313547e7c57baa85585f76b42f8d899eb17fb7e600

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Sources and history

View linked audit checks and correction history

Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: mrnabench-evaluation-supervised-cnn-go

areas
rna-transcriptomes
tasks
Gene Ontology term prediction
origin
author_reported
protocol
A linear probe over frozen embeddings, scored as the mean over ten random seeds.
comparison
protocol id: mrnabench-task-go; metric implementation: AUPRC (%)
missing metadata
checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
source locator
Table 2, row(Supervised CNN), column(GO)
evidence experiment set id
mrnabench-2025-linear-probing-default-splits
evidence overlap
Tables 5/6 provide variant-level details of the same probing experiment set summarized by Table 2. These tables are not independent repetitions; no exact selected variant is inferred.
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